CausalSentinel

Protein Dossier — ADAMTS13 (A disintegrin and metalloproteinase with thrombospondin motifs 13)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Primary sclerosing cholangitis -0.214 0.0677 0.00157 Wald ratio 1 cis NA
Diagnoses - main ICD10: B37 Candidiasis 0.449 0.151 0.00294 Wald ratio 1 cis NA
Non-cancer illness code self-reported: hypertension -0.0242 0.00845 0.00411 Wald ratio 1 cis NA
Diagnoses - main ICD10: I80 Phlebitis and thrombophlebitis 0.166 0.0602 0.00586 Wald ratio 1 cis NA
Non-cancer illness code self-reported: retinal detachment 0.19 0.07 0.00653 Wald ratio 1 cis NA
Non-cancer illness code self-reported: bone disorder 0.214 0.0839 0.0106 Wald ratio 1 cis NA
Non-cancer illness code self-reported: vitiligo 0.465 0.192 0.0154 Wald ratio 1 cis NA
Diagnoses - main ICD10: M17 Gonarthrosis [arthrosis of knee] -0.088 0.0381 0.0208 Wald ratio 1 cis NA
Non-cancer illness code self-reported: enlarged prostate 0.0871 0.0379 0.0218 Wald ratio 1 cis NA
Diagnoses - main ICD10: K43 Ventral hernia -0.17 0.0867 0.0503 Wald ratio 1 cis NA
Non-cancer illness code self-reported: hayfever or allergic rhinitis 0.0352 0.0192 0.0668 Wald ratio 1 cis NA
Sodium in urine -0.00871 0.00476 0.067 Wald ratio 1 cis NA
…and 70 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

Dataset Trait Author Year
prot-c-3175_51_5 ATS13 Suhre K 2019

3. GWAS Catalog results — traits with signal at this locus

147 association rows across 95 traits (138 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Circulating ADAMTS13 levels 2e-839 rs74715985 7 GCST90859747 no MR -> candidate analysis
Circulating ICAM2 levels 3e-644 rs149181677 1 GCST90859991 no MR -> candidate analysis
Circulating IL7R levels 5e-423 rs149181677 1 GCST90860451 no MR -> candidate analysis
A disintegrin and metalloproteinase with thrombospondin moti 3e-420 rs35516997 8 GCST90246427 no MR -> candidate analysis
Circulating TIE1 levels 2e-302 rs41296094 1 GCST90860467 no MR -> candidate analysis
SELE protein levels 5e-231 rs35355611 2 GCST90470566 no MR -> candidate analysis
Serum alkaline phosphatase levels 1e-181 rs4962050 5 GCST90019494 no MR -> candidate analysis
Circulating LGALS8 levels 2e-161 rs149181677 1 GCST90859688 no MR -> candidate analysis
TIE1 protein levels 3e-151 rs28446901 1 GCST90470863 no MR -> candidate analysis
Circulating PCDH17 levels 4e-149 rs41296094 2 GCST90860509 no MR -> candidate analysis
Serum levels of protein ADAMTS13 5e-122 rs34054981 3 GCST90088247 no MR -> candidate analysis
A disintegrin and metalloproteinase with thrombospondin moti 4e-103 rs71503194 4 GCST90240161 no MR -> candidate analysis
…and 83 more traits (see JSON)          

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

Top diseases by Open Targets association (of 634 total). Associations are loci, not causal claims. The causal-status column is a four-state triage per pair: established (curated) = a curated clinical assertion exists (ClinGen/G2P/GEL/Orphanet/ClinVar — any validity level, MR adds little); exploratory rare-variant signal = ExWAS burden evidence without curation — a candidate NEW gene-disease relationship; common-variant locus = GWAS signal, classic pQTL-MR territory; multi-layer = burden+GWAS together, an allelic-series candidate (the strongest causal setup). Burden estimand is carrier-vs-noncarrier, not per-SD MR.

Disease genetic assoc. burden (ExWAS) causal status MR status
congenital thrombotic thrombocytopenic purpura 0.947 established (curated) no MR -> candidate analysis
thrombotic thrombocytopenic purpura 0.861 established (curated) no MR -> candidate analysis
Thrombocytopenia 0.593 established (curated) no MR -> candidate analysis
Abnormal bleeding 0.593 established (curated) no MR -> candidate analysis
atypical hemolytic-uremic syndrome 0.491 established (curated) no MR -> candidate analysis
hereditary disease 0.319 established (curated) no MR -> candidate analysis
thrombotic disease 0.265 established (curated) no MR -> candidate analysis

Of the 7 rows above, 7 have no MR estimate in this resource. Across all retrieved diseases for this gene: 0 exploratory rare-variant signal(s), 0 multi-layer (allelic-series candidate) pair(s). Final triage still belongs to a statistical geneticist.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability 1 known modulators (A disintegrin and metalloproteinase with thrombospondin motifs 13)
gnomAD constraint pLI=5.1e-26, LOEUF=0.831 — LoF-tolerant
GWAS Catalog 190 unique SNPs / 540 rows
ClinVar 1259 records; 3 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance