CausalSentinel

Protein Dossier — ADAMTS5 (A disintegrin and metalloproteinase with thrombospondin motifs 5)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Height 0.0149 0.00373 6.33e-05 Wald ratio 1 cis NA
Forced expiratory volume in 1-second (FEV1) 0.00979 0.00263 2.01e-04 Wald ratio 1 cis NA
Non-cancer illness code self-reported: arthritis (nos) -0.15 0.0407 2.21e-04 Wald ratio 1 cis NA
Diagnoses - main ICD10: G56 Mononeuropathies of upper limb 0.0747 0.0215 4.99e-04 Wald ratio 1 cis NA
Forced vital capacity (FVC) 0.00699 0.0025 0.00507 Wald ratio 1 cis NA
Body fat -0.0157 0.0069 0.0232 Wald ratio 1 cis NA
Schizophrenia -0.0295 0.0136 0.0299 Wald ratio 1 cis NA
Cigarettes smoked per day 0.221 0.104 0.0336 Wald ratio 1 cis NA
Non-cancer illness code self-reported: pernicious anaemia -0.137 0.0645 0.0342 Wald ratio 1 cis NA
Cancer code self-reported: basal cell carcinoma 0.0621 0.0298 0.0373 Wald ratio 1 cis NA
Non-cancer illness code self-reported: diverticular disease or diverticulitis 0.0559 0.0272 0.0398 Wald ratio 1 cis NA
Potassium in urine -0.00614 0.00309 0.0465 Wald ratio 1 cis NA
…and 104 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

Dataset Trait Author Year
prot-c-3168_8_2 ADAMTS-5 Suhre K 2019

3. GWAS Catalog results — traits with signal at this locus

80 association rows across 41 traits (74 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
A disintegrin and metalloproteinase with thrombospondin moti 4e-469 rs2830586 10 GCST90246431 no MR -> candidate analysis
Blood protein levels 1e-249 rs2830585 1 GCST006585 no MR -> candidate analysis
TGFBR3 protein levels 1e-135 rs1236213 7 GCST90470848 no MR -> candidate analysis
Circulating TGFBR3 levels 1e-127 rs1236213 5 GCST90860476 no MR -> candidate analysis
HYOU1/TGFBR3 protein level ratio 3e-101 rs406835 1 GCST90315105 no MR -> candidate analysis
Height 5e-92 rs2830586 15 GCST90245848 MR: beta=0.0149, p=6.33e-05 (cis)
A disintegrin and metalloproteinase with thrombospondin moti 2e-72 rs2830586 2 GCST90240165 no MR -> candidate analysis
Transforming growth factor beta receptor type 3 levels 3e-20 rs1034350 1 GCST90249855 no MR -> candidate analysis
Standing height (UKB data field 50) 5e-18 rs2830581 1 GCST90468178 no MR -> candidate analysis
TNXB protein levels 6e-17 rs1236213 1 GCST90470930 no MR -> candidate analysis
Circulating TNXB levels 2e-16 rs1236213 1 GCST90860458 no MR -> candidate analysis
Height (baseline) 3e-13 rs2830581 1 GCST90565843 no MR -> candidate analysis
…and 29 more traits (see JSON)          

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

Top diseases by Open Targets association (of 366 total). Associations are loci, not causal claims. The causal-status column is a four-state triage per pair: established (curated) = a curated clinical assertion exists (ClinGen/G2P/GEL/Orphanet/ClinVar — any validity level, MR adds little); exploratory rare-variant signal = ExWAS burden evidence without curation — a candidate NEW gene-disease relationship; common-variant locus = GWAS signal, classic pQTL-MR territory; multi-layer = burden+GWAS together, an allelic-series candidate (the strongest causal setup). Burden estimand is carrier-vs-noncarrier, not per-SD MR.

Disease genetic assoc. burden (ExWAS) causal status MR status
Abnormality of the skeletal system 0.883 common-variant locus no MR -> candidate analysis
major depressive disorder 0.71 common-variant locus no MR -> candidate analysis
synovium disorder 0.579 common-variant locus no MR -> candidate analysis
information processing speed 0.521 common-variant locus no MR -> candidate analysis
alcohol drinking 0.516 common-variant locus no MR -> candidate analysis
pelvic organ prolapse 0.463 common-variant locus no MR -> candidate analysis
glioblastoma 0.43 common-variant locus no MR -> candidate analysis
pyogenic granuloma 0.44 common-variant locus no MR -> candidate analysis
colorectal carcinoma 0.396 common-variant locus no MR -> candidate analysis
urolithiasis 0.419 common-variant locus no MR -> candidate analysis
stroke disorder 0.388 common-variant locus no MR -> candidate analysis
eye disorder 0.367 common-variant locus no MR -> candidate analysis
Umbilical hernia 0.364 common-variant locus no MR -> candidate analysis
Dupuytren Contracture 0.364 common-variant locus no MR -> candidate analysis
ventral hernia 0.364 common-variant locus no MR -> candidate analysis

Of the 15 rows above, 15 have no MR estimate in this resource. Across all retrieved diseases for this gene: 0 exploratory rare-variant signal(s), 0 multi-layer (allelic-series candidate) pair(s). Final triage still belongs to a statistical geneticist.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability 1 known modulators (A disintegrin and metalloproteinase with thrombospondin motifs 5)
gnomAD constraint pLI=3.9e-12, LOEUF=0.832 — LoF-tolerant
GWAS Catalog 51 unique SNPs / 96 rows
ClinVar 236 records; 4 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance