CausalSentinel

Protein Dossier — ADH7 (All-trans-retinol dehydrogenase [NAD(+)] ADH7)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Alcohol intake frequency -0.0509 0.0151 7.38e-04 Wald ratio 1 cis NA
Age at menopause -0.224 0.0748 0.0027 Wald ratio 1 cis NA
Lung cancer 0.164 0.0649 0.0116 Wald ratio 1 cis NA
Non-cancer illness code self-reported: gout -0.293 0.116 0.012 Wald ratio 1 cis NA
Lung adenocarcinoma 0.237 0.0964 0.0139 Wald ratio 1 cis NA
Diagnoses - main ICD10: D25 Leiomyoma of uterus 0.181 0.0756 0.0166 Wald ratio 1 cis NA
Caudate volume -48.2 20.1 0.0166 Wald ratio 1 cis NA
Eye problems or disorders: Injury or trauma resulting in loss of vision 0.244 0.106 0.0212 Wald ratio 1 cis NA
Haemoglobin concentration -0.0581 0.0254 0.0224 Wald ratio 1 cis NA
Urate -0.0474 0.0212 0.0254 Wald ratio 1 cis NA
Mean cell haemoglobin concentration -0.0327 0.0152 0.0318 Wald ratio 1 cis NA
Diagnoses - main ICD10: J33 Nasal polyp 0.247 0.118 0.0356 Wald ratio 1 cis NA
…and 83 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

No prot-* pQTL GWAS dataset found for this protein (matched by UniProt accession and symbol).

3. GWAS Catalog results — traits with signal at this locus

72 association rows across 44 traits (50 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Drinks per week 5e-156 rs4699743 8 GCST90243984 no MR -> candidate analysis
Alcohol dehydrogenase class 4 mu/sigma chain levels 2e-98 rs146315698 1 GCST90246437 no MR -> candidate analysis
Serum levels of protein ADH7 4e-24 rs17589306 1 GCST90086716 no MR -> candidate analysis
Alcohol consumption (drinks per week) 2e-22 rs2165670 4 GCST007461 no MR -> candidate analysis
Protein quantitative trait loci (liver) 2e-21 rs1442493 6 GCST011427 no MR -> candidate analysis
Apolipoprotein A1 levels 7e-20 rs1583974 1 GCST010241 no MR -> candidate analysis
Bitter alcoholic beverage consumption 3e-17 rs62305780 2 GCST008522 no MR -> candidate analysis
Blood protein levels 8e-17 rs17529509 1 GCST006585 no MR -> candidate analysis
Oral cavity and pharyngeal cancer 9e-17 rs971074 1 GCST001011 no MR -> candidate analysis
Hemoglobin levels 3e-15 rs58382379 1 GCST90662903 no MR -> candidate analysis
Serum total protein levels 5e-15 rs200191165 1 GCST90018976 no MR -> candidate analysis
Substance use disorder 6e-14 rs58992395 3 GCST90704949 no MR -> candidate analysis
…and 32 more traits (see JSON)          

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

Top diseases by Open Targets association (of 208 total). Associations are loci, not causal claims. The causal-status column is a four-state triage per pair: established (curated) = a curated clinical assertion exists (ClinGen/G2P/GEL/Orphanet/ClinVar — any validity level, MR adds little); exploratory rare-variant signal = ExWAS burden evidence without curation — a candidate NEW gene-disease relationship; common-variant locus = GWAS signal, classic pQTL-MR territory; multi-layer = burden+GWAS together, an allelic-series candidate (the strongest causal setup). Burden estimand is carrier-vs-noncarrier, not per-SD MR.

Disease genetic assoc. burden (ExWAS) causal status MR status
carcinoma of esophagus 0.559 common-variant locus no MR -> candidate analysis
spondylolisthesis 0.411 common-variant locus no MR -> candidate analysis
ovarian neoplasm 0.411 common-variant locus no MR -> candidate analysis
high altitude adaptation 0.357 common-variant locus no MR -> candidate analysis

Of the 4 rows above, 4 have no MR estimate in this resource. Across all retrieved diseases for this gene: 0 exploratory rare-variant signal(s), 0 multi-layer (allelic-series candidate) pair(s). Final triage still belongs to a statistical geneticist.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability 0 known modulators (All-trans-retinol dehydrogenase [NAD(+)] ADH7)
gnomAD constraint pLI=1.1e-16, LOEUF=1.55 — LoF-tolerant
GWAS Catalog 111 unique SNPs / 284 rows
ClinVar 103 records; 2 pathogenic in sample of 30
PharmGKB/ClinPGx 1 clinical annotations across 1 drugs

Caveats declared by the tools

Sources

Provenance