CausalSentinel

Protein Dossier — CCL14 (C-C motif chemokine 14)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Melanoma 0.234 0.102 0.0217 Wald ratio 1 cis NA
Anorexia nervosa 0.1 0.0512 0.0503 Wald ratio 1 cis NA
Breast cancer (Combined Oncoarray; iCOGS; GWAS meta analysis) -0.0246 0.0126 0.0504 Inverse variance weighted 2 trans NA
Breast cancer (Combined Oncoarray; iCOGS; GWAS meta analysis) -0.0246 0.0126 0.0504 Inverse variance weighted 2 cis NA
Non-cancer illness code self-reported: gout -0.0892 0.0469 0.0573 Inverse variance weighted 2 trans NA
Non-cancer illness code self-reported: gout -0.0892 0.0469 0.0573 Inverse variance weighted 2 cis NA
Diagnoses - main ICD10: S76 Injury of muscle and tendon at hip and thigh level 0.375 0.212 0.0771 Inverse variance weighted 2 trans NA
Diagnoses - main ICD10: S76 Injury of muscle and tendon at hip and thigh level 0.375 0.212 0.0771 Inverse variance weighted 2 cis NA
Platelet count 1.25 0.705 0.0775 Inverse variance weighted 2 trans NA
Platelet count 1.25 0.705 0.0775 Inverse variance weighted 2 cis NA
Urate 0.0191 0.011 0.0829 Inverse variance weighted 2 trans NA
Urate 0.0191 0.011 0.0829 Inverse variance weighted 2 cis NA
…and 151 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

Dataset Trait Author Year
prot-c-2900_53_3 HCC-1 Suhre K 2019

3. GWAS Catalog results — traits with signal at this locus

139 association rows across 61 traits (132 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Circulating CCL15 levels 2e-5134 rs854624 3 GCST90859974 no MR -> candidate analysis
CCL14/CCL23 protein level ratio 8e-1578 rs72830000 1 GCST90313678 no MR -> candidate analysis
C-C motif chemokine 15 levels 3e-1432 rs854628 12 GCST90246903 no MR -> candidate analysis
CCL15/CCL23 protein level ratio 4e-1384 rs75238886 1 GCST90313681 no MR -> candidate analysis
CCL14/CST3 protein level ratio 1e-1319 rs72830000 1 GCST90313679 no MR -> candidate analysis
Circulating CCL14 levels 5e-1269 rs9892586 2 GCST90860489 no MR -> candidate analysis
Circulating CCL23 levels (id: OID00530_OID20693) 2e-1094 rs712048 3 GCST90859884 no MR -> candidate analysis
Circulating CCL23 levels (id: OID00811_OID20693) 2e-846 rs712048 3 GCST90860141 no MR -> candidate analysis
C-C motif chemokine 14 levels 2e-763 rs7222922 10 GCST90246902 no MR -> candidate analysis
C-C motif chemokine 15 levels (CCL15.14109.15.3) 3e-411 rs854624 1 GCST90240483 no MR -> candidate analysis
Ck-beta-8-1 levels 9e-326 rs712048 3 GCST90247039 no MR -> candidate analysis
Serum levels of protein CCL15 3e-293 rs41508645 1 GCST90088428 no MR -> candidate analysis
…and 49 more traits (see JSON)          

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

Top diseases by Open Targets association (of 134 total). Associations are loci, not causal claims. The causal-status column is a four-state triage per pair: established (curated) = a curated clinical assertion exists (ClinGen/G2P/GEL/Orphanet/ClinVar — any validity level, MR adds little); exploratory rare-variant signal = ExWAS burden evidence without curation — a candidate NEW gene-disease relationship; common-variant locus = GWAS signal, classic pQTL-MR territory; multi-layer = burden+GWAS together, an allelic-series candidate (the strongest causal setup). Burden estimand is carrier-vs-noncarrier, not per-SD MR.

Disease genetic assoc. burden (ExWAS) causal status MR status
Raynaud disease 0.035 common-variant locus no MR -> candidate analysis

Of the 1 rows above, 1 have no MR estimate in this resource. Across all retrieved diseases for this gene: 0 exploratory rare-variant signal(s), 0 multi-layer (allelic-series candidate) pair(s). Final triage still belongs to a statistical geneticist.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability not available — no ChEMBL target (undrugged)
gnomAD constraint pLI=0.0012, LOEUF=1.76 — LoF-tolerant
GWAS Catalog 151 unique SNPs / 378 rows
ClinVar 26 records; 8 pathogenic in sample of 26
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance