CausalSentinel

Protein Dossier — CCL15 (C-C motif chemokine 15)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Subjective well being -0.0124 0.00414 0.0027 Wald ratio 1 cis NA
Non-cancer illness code self-reported: asthma -0.0225 0.00769 0.00344 Wald ratio 1 cis NA
Non-cancer illness code self-reported: mania or bipolar disorder or manic depression 0.13 0.0463 0.00501 Wald ratio 1 cis NA
Schizophrenia -0.0294 0.011 0.00753 Wald ratio 1 cis NA
Diagnoses - main ICD10: N20 Calculus of kidney and ureter -0.0889 0.0349 0.0109 Wald ratio 1 cis NA
Diagnoses - main ICD10: D12 Benign neoplasm of colon rectum anus and anal canal 0.0542 0.0215 0.0115 Wald ratio 1 cis NA
Non-cancer illness code self-reported: gastro-oesophageal reflux (gord) or gastric reflux 0.0314 0.0125 0.012 Wald ratio 1 cis NA
Non-cancer illness code self-reported: bladder problem (not cancer) -0.0915 0.0386 0.0178 Wald ratio 1 cis NA
Sleep duration -0.00481 0.00209 0.0216 Wald ratio 1 cis NA
Intracranial volume -4.66e+03 2.11e+03 0.027 Wald ratio 1 cis NA
Height 0.0195 0.00887 0.0278 Wald ratio 1 cis NA
Serum creatinine (eGFRcrea) -0.00231 0.00106 0.0303 Wald ratio 1 cis NA
…and 101 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

Dataset Trait Author Year
prot-c-3509_1_1 MIP-5 Suhre K 2019

3. GWAS Catalog results — traits with signal at this locus

135 association rows across 61 traits (130 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Circulating CCL15 levels 2e-5134 rs854624 3 GCST90859974 no MR -> candidate analysis
CCL14/CCL23 protein level ratio 8e-1578 rs72830000 1 GCST90313678 no MR -> candidate analysis
C-C motif chemokine 15 levels 3e-1432 rs854628 11 GCST90246903 no MR -> candidate analysis
CCL15/CCL23 protein level ratio 4e-1384 rs75238886 1 GCST90313681 no MR -> candidate analysis
CCL14/CST3 protein level ratio 1e-1319 rs72830000 1 GCST90313679 no MR -> candidate analysis
Circulating CCL14 levels 5e-1269 rs9892586 2 GCST90860489 no MR -> candidate analysis
Circulating CCL23 levels (id: OID00530_OID20693) 2e-1094 rs712048 3 GCST90859884 no MR -> candidate analysis
Circulating CCL23 levels (id: OID00811_OID20693) 2e-846 rs712048 3 GCST90860141 no MR -> candidate analysis
C-C motif chemokine 14 levels 2e-763 rs7222922 10 GCST90246902 no MR -> candidate analysis
C-C motif chemokine 15 levels (CCL15.14109.15.3) 3e-411 rs854624 1 GCST90240483 no MR -> candidate analysis
Ck-beta-8-1 levels 9e-326 rs712048 3 GCST90247039 no MR -> candidate analysis
Serum levels of protein CCL15 3e-293 rs41508645 1 GCST90088428 no MR -> candidate analysis
…and 49 more traits (see JSON)          

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

No genetically-associated diseases retrieved from Open Targets.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability not available — no ChEMBL target (undrugged)
gnomAD constraint pLI=0.0047, LOEUF=1.36 — LoF-tolerant
GWAS Catalog 165 unique SNPs / 400 rows
ClinVar 25 records; 8 pathogenic in sample of 25
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance