CausalSentinel

Protein Dossier — CCL18 (C-C motif chemokine 18)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Diagnoses - main ICD10: G47 Sleep disorders -0.181 0.0712 0.0108 Wald ratio 1 cis NA
Rheumatoid arthritis -0.0717 0.0282 0.0109 Wald ratio 1 cis NA
Eczema 0.0805 0.0317 0.011 Wald ratio 1 cis NA
Neo-openness to experience -0.317 0.128 0.0136 Wald ratio 1 cis NA
Amyotrophic lateral sclerosis 0.0786 0.0323 0.0149 Wald ratio 1 cis NA
Fractured bone site(s): Wrist -0.0803 0.035 0.022 Wald ratio 1 cis NA
Pallidum volume -7.87 3.44 0.0222 Wald ratio 1 cis NA
Diagnoses - main ICD10: J33 Nasal polyp -0.168 0.0783 0.0317 Wald ratio 1 cis NA
Forearm bone mineral density 0.0581 0.0285 0.0417 Wald ratio 1 cis NA
Alzheimer’s disease 0.0558 0.0287 0.0519 Wald ratio 1 cis NA
Intracranial volume -6.54e+03 3.46e+03 0.0585 Wald ratio 1 cis NA
Diagnoses - main ICD10: R11 Nausea and vomiting -0.158 0.0851 0.063 Wald ratio 1 cis NA
…and 82 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

Dataset Trait Author Year
prot-c-3044_3_2 PARC Suhre K 2019

3. GWAS Catalog results — traits with signal at this locus

89 association rows across 43 traits (85 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Circulating CCL18 levels 9e-1471 rs2015086 2 GCST90860473 no MR -> candidate analysis
ANG/CCL18 protein level ratio 7e-1018 rs56683451 1 GCST90313258 no MR -> candidate analysis
CCL18/RARRES2 protein level ratio 2e-1001 rs56683451 1 GCST90313690 no MR -> candidate analysis
CCL18/TFPI protein level ratio 4e-986 rs56683451 1 GCST90313691 no MR -> candidate analysis
C-C motif chemokine 18 levels 2e-635 rs2015086 10 GCST90246906 no MR -> candidate analysis
Circulating CCL23 levels (id: OID00530_OID20693) 3e-360 rs712046 1 GCST90859884 no MR -> candidate analysis
C-C motif chemokine 3 levels 2e-314 rs2015086 5 GCST90246917 no MR -> candidate analysis
CCL16 protein levels 1e-299 rs117259529 1 GCST90468568 no MR -> candidate analysis
Circulating CCL14 levels 4e-296 rs854466 2 GCST90860489 no MR -> candidate analysis
Circulating CCL23 levels (id: OID00811_OID20693) 8e-263 rs712046 1 GCST90860141 no MR -> candidate analysis
CCL15 protein levels 3e-260 rs117759380 5 GCST90468567 no MR -> candidate analysis
Serum levels of protein CCL18 4e-237 rs854469 2 GCST90088203 no MR -> candidate analysis
…and 31 more traits (see JSON)          

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

No genetically-associated diseases retrieved from Open Targets.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability not available — no ChEMBL target (undrugged)
gnomAD constraint pLI=0.0041, LOEUF=1.64 — LoF-tolerant
GWAS Catalog 167 unique SNPs / 409 rows
ClinVar 27 records; 11 pathogenic in sample of 27
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance