CausalSentinel

Protein Dossier — CCL4L1 (C-C motif chemokine 4-like)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Fractured bone site(s): Ankle 0.267 0.0773 5.41e-04 Wald ratio 1 cis NA
Crohn’s disease -0.161 0.0589 0.00635 Wald ratio 1 cis NA
Chronic kidney disease -0.201 0.0753 0.00766 Wald ratio 1 cis NA
Femoral neck bone mineral density 0.0894 0.0366 0.0146 Wald ratio 1 cis NA
Platelet count 4.99 2.08 0.0163 Wald ratio 1 cis NA
Low grade serous ovarian cancer 0.543 0.232 0.0194 Wald ratio 1 cis NA
Diagnoses - main ICD10: K57 Diverticular disease of intestine 0.164 0.0706 0.0203 Wald ratio 1 cis NA
Hip osteoarthritis -0.304 0.138 0.0277 Wald ratio 1 cis NA
Fasting proinsulin -0.0753 0.0356 0.0342 Wald ratio 1 cis NA
Neo-extraversion 0.73 0.368 0.0475 Wald ratio 1 cis NA
Non-cancer illness code self-reported: pneumothorax 0.661 0.339 0.051 Wald ratio 1 cis NA
Lumbar spine bone mineral density 0.0814 0.0426 0.0564 Wald ratio 1 cis NA
…and 87 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

Dataset Trait Author Year
prot-c-2781_63_2 LAG-1 Suhre K 2019

3. GWAS Catalog results — traits with signal at this locus

No GWAS Catalog associations mapped to this gene.

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

Top diseases by Open Targets association (of 292 total). Associations are loci, not causal claims. The causal-status column is a four-state triage per pair: established (curated) = a curated clinical assertion exists (ClinGen/G2P/GEL/Orphanet/ClinVar — any validity level, MR adds little); exploratory rare-variant signal = ExWAS burden evidence without curation — a candidate NEW gene-disease relationship; common-variant locus = GWAS signal, classic pQTL-MR territory; multi-layer = burden+GWAS together, an allelic-series candidate (the strongest causal setup). Burden estimand is carrier-vs-noncarrier, not per-SD MR.

Disease genetic assoc. burden (ExWAS) causal status MR status
multiple sclerosis 0.033 common-variant locus MR: beta=-0.116, p=0.148 (cis)

Of the 1 rows above, 0 have no MR estimate in this resource. Across all retrieved diseases for this gene: 0 exploratory rare-variant signal(s), 0 multi-layer (allelic-series candidate) pair(s). Final triage still belongs to a statistical geneticist.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability not available — no ChEMBL target (undrugged)
gnomAD constraint not available
GWAS Catalog no mapped SNPs
ClinVar 30 records; 25 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance