CausalSentinel

Protein Dossier — CCL4 (C-C motif chemokine 4)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Ulcerative colitis 0.179 0.0426 2.71e-05 Wald ratio 1 trans NA
Juvenile idiopathic arthritis -0.74 0.19 1.02e-04 Wald ratio 1 trans NA
Inflammatory bowel disease 0.117 0.0344 6.98e-04 Wald ratio 1 trans NA
Eye problems or disorders: Glaucoma 0.121 0.0407 0.00291 Inverse variance weighted 2 trans NA
Eye problems or disorders: Glaucoma 0.121 0.0407 0.00291 Inverse variance weighted 2 cis NA
Pulse rate 0.0267 0.00957 0.0053 Inverse variance weighted 2 trans NA
Pulse rate 0.0267 0.00957 0.0053 Inverse variance weighted 2 cis NA
Mean cell volume -0.301 0.111 0.00674 Wald ratio 1 trans NA
Diagnoses - main ICD10: R07 Pain in throat and chest 0.0585 0.0228 0.0104 Inverse variance weighted 2 trans NA
Diagnoses - main ICD10: R07 Pain in throat and chest 0.0585 0.0228 0.0104 Inverse variance weighted 2 cis NA
Non-cancer illness code self-reported: vitiligo 0.501 0.21 0.017 Inverse variance weighted 2 trans NA
Non-cancer illness code self-reported: vitiligo 0.501 0.21 0.017 Inverse variance weighted 2 cis NA
…and 159 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

No prot-* pQTL GWAS dataset found for this protein (matched by UniProt accession and symbol).

3. GWAS Catalog results — traits with signal at this locus

25 association rows across 21 traits (23 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
CCL3/CCL4 protein level ratio 7e-1388 rs1634517 1 GCST90313697 no MR -> candidate analysis
C-C motif chemokine 3 levels 2e-320 rs1634517 1 GCST90012055 no MR -> candidate analysis
CCL16 protein levels 2e-200 rs148048971 1 GCST90468568 no MR -> candidate analysis
Circulating CCL4 levels (id: OID00796_OID20695) 2e-156 rs200657610 1 GCST90860128 no MR -> candidate analysis
CCL4 protein levels 2e-149 rs1634513 1 GCST90468583 no MR -> candidate analysis
Circulating CCL4 levels (id: OID00498_OID20695) 3e-140 rs200657610 1 GCST90859854 no MR -> candidate analysis
CCL3 protein levels 1e-91 rs9709233 2 GCST90468582 no MR -> candidate analysis
C-C motif chemokine 3-like 1 levels 6e-69 rs149759822 1 GCST90137673 no MR -> candidate analysis
Circulating CCL16 levels 3e-45 rs550697938 1 GCST90859998 no MR -> candidate analysis
Circulating CCL18 levels 1e-29 rs1634508 1 GCST90860473 no MR -> candidate analysis
Beta-2-microglobulin level in Chronic kidney disease with hy 6e-26 rs9900984 1 GCST90232921 no MR -> candidate analysis
C-C motif chemokine 4-like levels 8e-26 rs1719205 1 GCST90246919 no MR -> candidate analysis
…and 9 more traits (see JSON)          

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

No genetically-associated diseases retrieved from Open Targets.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability not available — no ChEMBL target (undrugged)
gnomAD constraint pLI=0.0041, LOEUF=1.39 — LoF-tolerant
GWAS Catalog 113 unique SNPs / 267 rows
ClinVar 41 records; 7 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance