CausalSentinel

Protein Dossier — CCL8 (C-C motif chemokine 8)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Crohn’s disease 0.109 0.0358 0.00239 Wald ratio 1 cis NA
Non-cancer illness code self-reported: kidney stone or ureter stone or bladder stone 0.195 0.066 0.00311 Wald ratio 1 cis NA
Inflammatory bowel disease 0.0795 0.0294 0.00689 Wald ratio 1 cis NA
Non-cancer illness code self-reported: mania or bipolar disorder or manic depression 0.265 0.108 0.014 Wald ratio 1 cis NA
Diagnoses - main ICD10: N20 Calculus of kidney and ureter 0.165 0.0717 0.0215 Wald ratio 1 cis NA
Diagnoses - main ICD10: M17 Gonarthrosis [arthrosis of knee] -0.127 0.058 0.0286 Wald ratio 1 cis NA
Percent emphysema 0.0623 0.0287 0.03 Wald ratio 1 cis NA
Microalbuminuria -0.121 0.0574 0.0348 Wald ratio 1 cis NA
Subjective well being 0.017 0.0085 0.0455 Wald ratio 1 cis NA
Fracture resulting from simple fall -0.0379 0.0194 0.0508 Wald ratio 1 cis NA
Mean platelet volume -0.00574 0.00298 0.0538 Wald ratio 1 cis NA
Systemic lupus erythematosus -0.259 0.136 0.0575 Wald ratio 1 cis NA
…and 97 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

Dataset Trait Author Year
prot-c-2785_15_2 MCP-2 Suhre K 2019

3. GWAS Catalog results — traits with signal at this locus

88 association rows across 40 traits (76 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Circulating CCL8 levels (id: OID00549_OID21466) 1e-5501 rs1133763 4 GCST90859899 no MR -> candidate analysis
Circulating CCL8 levels (id: OID00795_OID21466) 4e-3481 rs1133763 4 GCST90860127 no MR -> candidate analysis
C-C motif chemokine 8 levels 8e-1704 rs1133763 8 GCST90246922 no MR -> candidate analysis
C-C motif chemokine 7 levels 2e-718 rs1133763 10 GCST90246921 no MR -> candidate analysis
CCL13/CCL8 protein level ratio 9e-495 rs11652256 1 GCST90313676 no MR -> candidate analysis
Blood protein levels 2e-460 rs4795912 6 GCST006585 no MR -> candidate analysis
CCL13 protein levels 4e-263 rs3136674 2 GCST90468565 no MR -> candidate analysis
C-C motif chemokine 8 (analyte X13748.4) levels 1e-187 rs12450497 1 GCST90422346 no MR -> candidate analysis
Corneodesmosin levels 1e-120 rs3136674 1 GCST90247131 no MR -> candidate analysis
CCL8 protein levels 2e-116 rs34202026 16 GCST90468586 no MR -> candidate analysis
Serum levels of protein CCL8 5e-109 rs3138036 1 GCST90088070 no MR -> candidate analysis
C-C motif chemokine 7 levels (CCL7.4886.3.1) 7e-72 rs11342894 2 GCST90240501 no MR -> candidate analysis
…and 28 more traits (see JSON)          

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

Top diseases by Open Targets association (of 456 total). Associations are loci, not causal claims. The causal-status column is a four-state triage per pair: established (curated) = a curated clinical assertion exists (ClinGen/G2P/GEL/Orphanet/ClinVar — any validity level, MR adds little); exploratory rare-variant signal = ExWAS burden evidence without curation — a candidate NEW gene-disease relationship; common-variant locus = GWAS signal, classic pQTL-MR territory; multi-layer = burden+GWAS together, an allelic-series candidate (the strongest causal setup). Burden estimand is carrier-vs-noncarrier, not per-SD MR.

Disease genetic assoc. burden (ExWAS) causal status MR status
alcohol drinking 0.198 common-variant locus no MR -> candidate analysis
systemic lupus erythematosus 0.04 common-variant locus MR: beta=-0.259, p=0.0575 (cis)
inflammatory bowel disease 0.135 common-variant locus MR: beta=0.0795, p=0.00689 (cis)
cartilage disease 0.095 common-variant locus no MR -> candidate analysis

Of the 4 rows above, 2 have no MR estimate in this resource. Across all retrieved diseases for this gene: 0 exploratory rare-variant signal(s), 0 multi-layer (allelic-series candidate) pair(s). Final triage still belongs to a statistical geneticist.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability not available — no ChEMBL target (undrugged)
gnomAD constraint pLI=0.24, LOEUF=1.17 — LoF-tolerant
GWAS Catalog 87 unique SNPs / 174 rows
ClinVar 38 records; 3 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance