CausalSentinel

Protein Dossier — CLMP (CXADR-like membrane protein)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Heel bone mineral density (BMD) T-score automated -0.0489 0.0127 1.14e-04 Wald ratio 1 cis NA
Systolic blood pressure automated reading 0.0333 0.01 8.63e-04 Wald ratio 1 cis NA
Non-cancer illness code self-reported: joint disorder 0.331 0.104 0.00142 Wald ratio 1 cis NA
Sleep duration -0.0234 0.00763 0.00217 Wald ratio 1 cis NA
Low grade serous ovarian cancer 0.583 0.194 0.0027 Wald ratio 1 cis NA
ER-positive Breast cancer (Combined Oncoarray; iCOGS; GWAS meta analysis) -0.0894 0.0301 0.00295 Wald ratio 1 cis NA
Mean platelet volume 0.0116 0.00401 0.00373 Wald ratio 1 cis NA
Non-cancer illness code self-reported: hypertension 0.0449 0.0159 0.00483 Wald ratio 1 cis NA
Breast cancer (Combined Oncoarray; iCOGS; GWAS meta analysis) -0.0698 0.0253 0.00575 Wald ratio 1 cis NA
Glioma -0.482 0.179 0.00709 Wald ratio 1 cis NA
Pulse rate -0.0448 0.0172 0.00927 Wald ratio 1 cis NA
Haemoglobin concentration 0.0626 0.0241 0.00932 Wald ratio 1 cis NA
…and 109 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

No prot-* pQTL GWAS dataset found for this protein (matched by UniProt accession and symbol).

3. GWAS Catalog results — traits with signal at this locus

101 association rows across 58 traits (78 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Circulating CLMP levels 3e-805 rs2302605 5 GCST90860328 no MR -> candidate analysis
CLMP/PIK3IP1 protein level ratio 3e-556 rs7113140 1 GCST90314134 no MR -> candidate analysis
CLMP protein levels 2e-148 rs11218995 10 GCST90468783 no MR -> candidate analysis
CXADR-like membrane protein levels 5e-68 rs2155572 2 GCST90247200 no MR -> candidate analysis
Hematological traits (multi-trait analysis) 1e-64 rs190733142 1 GCST90838671 no MR -> candidate analysis
Mean corpuscular hemoglobin concentration 5e-43 rs113954756 8 GCST90002332 no MR -> candidate analysis
mean corpuscular hemoglobin concentration (MCHC, mean, inv-n 3e-42 rs11218953 1 GCST90479670 no MR -> candidate analysis
heart rate (HR, mean, inv-normal transformed) 9e-42 rs7113140 2 GCST90476338 no MR -> candidate analysis
Red cell distribution width 3e-35 rs7933208 5 GCST90002372 no MR -> candidate analysis
Serum levels of protein CLMP 4e-35 rs7941947 1 GCST90086270 no MR -> candidate analysis
HSPA1A/WWP2 protein level ratio 1e-32 rs2276348 1 GCST90315086 no MR -> candidate analysis
FIS1/HSPA1A protein level ratio 1e-31 rs2276348 1 GCST90314825 no MR -> candidate analysis
…and 46 more traits (see JSON)          

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

Top diseases by Open Targets association (of 850 total). Associations are loci, not causal claims. The causal-status column is a four-state triage per pair: established (curated) = a curated clinical assertion exists (ClinGen/G2P/GEL/Orphanet/ClinVar — any validity level, MR adds little); exploratory rare-variant signal = ExWAS burden evidence without curation — a candidate NEW gene-disease relationship; common-variant locus = GWAS signal, classic pQTL-MR territory; multi-layer = burden+GWAS together, an allelic-series candidate (the strongest causal setup). Burden estimand is carrier-vs-noncarrier, not per-SD MR.

Disease genetic assoc. burden (ExWAS) causal status MR status
congenital short bowel syndrome 0.603 established (curated) no MR -> candidate analysis
congenital short bowel syndrome, autosomal recessive 0.824 established (curated) no MR -> candidate analysis
intestinal pseudo-obstruction 0.717 established (curated) no MR -> candidate analysis
disorder of ear 0.507 common-variant locus no MR -> candidate analysis
placental abruption 0.47 common-variant locus no MR -> candidate analysis
hemorrhoid 0.443 common-variant locus no MR -> candidate analysis
central nervous system cancer 0.429 common-variant locus no MR -> candidate analysis
hereditary disease 0.316 established (curated) no MR -> candidate analysis
response to stimulus 0.284 common-variant locus no MR -> candidate analysis
hyperpituitarism 0.276 common-variant locus no MR -> candidate analysis
ovarian neoplasm 0.276 common-variant locus no MR -> candidate analysis
cardiomyopathy 0.272 common-variant locus no MR -> candidate analysis
stroke disorder 0.236 common-variant locus no MR -> candidate analysis
cancer 0.236 common-variant locus MR: beta=0.331, p=0.00142 (cis)
diabetes mellitus 0.236 common-variant locus no MR -> candidate analysis

Of the 15 rows above, 14 have no MR estimate in this resource. Across all retrieved diseases for this gene: 0 exploratory rare-variant signal(s), 0 multi-layer (allelic-series candidate) pair(s). Final triage still belongs to a statistical geneticist.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability not available — no ChEMBL target (undrugged)
gnomAD constraint pLI=1.3e-05, LOEUF=0.824 — LoF-tolerant
GWAS Catalog 95 unique SNPs / 196 rows
ClinVar 128 records; 4 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance