CausalSentinel

Protein Dossier — DUT (Deoxyuridine 5’-triphosphate nucleotidohydrolase, mitochondrial)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Pallidum volume -55.6 16.3 6.38e-04 Wald ratio 1 cis NA
Diagnoses - main ICD10: R10 Abdominal and pelvic pain 0.232 0.0782 0.00305 Wald ratio 1 cis NA
Potassium in urine 0.0547 0.0205 0.00778 Wald ratio 1 cis NA
Myocardial infarction 0.197 0.0776 0.0112 Wald ratio 1 cis NA
Fractured or broken bones in last 5 years 0.137 0.0553 0.0133 Wald ratio 1 cis NA
Diagnoses - main ICD10: S66 Injury of muscle and tendon at wrist and hand level 0.685 0.281 0.0146 Wald ratio 1 cis NA
Diagnoses - main ICD10: H25 Senile cataract 0.375 0.164 0.0223 Wald ratio 1 cis NA
Fractured bone site(s): Wrist 0.257 0.114 0.0234 Wald ratio 1 cis NA
Diagnoses - main ICD10: K20 Oesophagitis 0.337 0.15 0.0251 Wald ratio 1 cis NA
Creatinine (enzymatic) in urine 0.0432 0.0194 0.0257 Wald ratio 1 cis NA
Birth weight -0.0681 0.0307 0.0263 Wald ratio 1 cis NA
Forced vital capacity (FVC) -0.0365 0.0166 0.0284 Wald ratio 1 cis NA
…and 55 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

No prot-* pQTL GWAS dataset found for this protein (matched by UniProt accession and symbol).

3. GWAS Catalog results — traits with signal at this locus

46 association rows across 31 traits (38 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Height 3e-220 rs8042740 11 GCST90245848 no MR -> candidate analysis
Standing height (UKB data field 50) 3e-31 rs12592845 1 GCST90468178 no MR -> candidate analysis
Height (baseline) 6e-27 rs79943855 2 GCST90565843 no MR -> candidate analysis
Height (maximum, inv-normal transformed) 4e-25 rs1820489 2 GCST90479634 no MR -> candidate analysis
height (mean, inv-normal transformed) 5e-25 rs1820489 2 GCST90479635 no MR -> candidate analysis
height (minimum, inv-normal transformed) 2e-21 rs1820489 1 GCST90475364 no MR -> candidate analysis
Serum levels of protein DUT 6e-19 rs76539098 1 GCST90090954 no MR -> candidate analysis
Body shape phenotype PC2 1e-17 rs8042740 1 GCST90832990 no MR -> candidate analysis
Height (standard GWA) 4e-17 rs79943855 1 GCST90267284 no MR -> candidate analysis
Waist circumference adjusted for body mass index 7e-16 rs12592845 2 GCST009867 no MR -> candidate analysis
Physical function (baseline) 3e-15 rs8042740 2 GCST90565837 no MR -> candidate analysis
Body size (confirmatory factor analysis Factor 21) 3e-12 rs12592845 1 GCST90309355 no MR -> candidate analysis
…and 19 more traits (see JSON)          

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

Top diseases by Open Targets association (of 98 total). Associations are loci, not causal claims. The causal-status column is a four-state triage per pair: established (curated) = a curated clinical assertion exists (ClinGen/G2P/GEL/Orphanet/ClinVar — any validity level, MR adds little); exploratory rare-variant signal = ExWAS burden evidence without curation — a candidate NEW gene-disease relationship; common-variant locus = GWAS signal, classic pQTL-MR territory; multi-layer = burden+GWAS together, an allelic-series candidate (the strongest causal setup). Burden estimand is carrier-vs-noncarrier, not per-SD MR.

Disease genetic assoc. burden (ExWAS) causal status MR status
bone marrow failure and diabetes mellitus syndrome 0.508 established (curated) no MR -> candidate analysis
benign neoplasm of eye 0.232 common-variant locus no MR -> candidate analysis
pathological myopia 0.182 established (curated) no MR -> candidate analysis
myopia 0.182 established (curated) no MR -> candidate analysis
abdominal aortic aneurysm 0.113 common-variant locus no MR -> candidate analysis
spontaneous coronary artery dissection 0.107 common-variant locus no MR -> candidate analysis
Abnormality of the skeletal system 0.093 common-variant locus no MR -> candidate analysis
refractive error 0.091 common-variant locus no MR -> candidate analysis
Abnormality of refraction 0.073 common-variant locus no MR -> candidate analysis
chronic hepatitis 0.059 common-variant locus no MR -> candidate analysis
primary angle-closure glaucoma 0.058 common-variant locus no MR -> candidate analysis
placental abruption 0.058 common-variant locus no MR -> candidate analysis
bone Paget disease 0.057 common-variant locus no MR -> candidate analysis
food allergy 0.057 common-variant locus no MR -> candidate analysis
keloid 0.054 common-variant locus no MR -> candidate analysis

Of the 15 rows above, 15 have no MR estimate in this resource. Across all retrieved diseases for this gene: 0 exploratory rare-variant signal(s), 0 multi-layer (allelic-series candidate) pair(s). Final triage still belongs to a statistical geneticist.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability 0 known modulators (Deoxyuridine 5’-triphosphate nucleotidohydrolase, mitochondrial)
gnomAD constraint pLI=5.5e-06, LOEUF=1.05 — LoF-tolerant
GWAS Catalog 100 unique SNPs / 163 rows
ClinVar 48 records; 10 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance