CausalSentinel

Protein Dossier — EHBP1 (EH domain-binding protein 1)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Body mass index (BMI) 0.0328 0.012 0.00607 Wald ratio 1 trans NA
Alcohol intake frequency 0.0458 0.0177 0.0096 Wald ratio 1 trans NA
Vascular or heart problems diagnosed by doctor: Angina 0.147 0.0581 0.0116 Wald ratio 1 trans NA
Pulse rate 0.0494 0.0211 0.0193 Wald ratio 1 trans NA
Non-cancer illness code self-reported: iron deficiency anaemia 0.285 0.126 0.0235 Wald ratio 1 trans NA
Breast cancer (Combined Oncoarray; iCOGS; GWAS meta analysis) 0.0828 0.038 0.0296 Wald ratio 1 trans NA
Cardioembolic stroke -0.671 0.311 0.0312 Wald ratio 1 trans NA
Eye problems or disorders: Cataract 0.121 0.0581 0.0376 Wald ratio 1 trans NA
Diastolic blood pressure automated reading -0.025 0.0123 0.0417 Wald ratio 1 trans NA
Creatinine (enzymatic) in urine 0.0229 0.0115 0.0458 Wald ratio 1 trans NA
ER-positive Breast cancer (Combined Oncoarray; iCOGS; GWAS meta analysis) 0.0909 0.0456 0.046 Wald ratio 1 trans NA
Diagnoses - main ICD10: K57 Diverticular disease of intestine -0.21 0.105 0.0461 Wald ratio 1 trans NA
…and 78 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

No prot-* pQTL GWAS dataset found for this protein (matched by UniProt accession and symbol).

3. GWAS Catalog results — traits with signal at this locus

209 association rows across 118 traits (164 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Low-density lipoprotein levels 2e-62 rs9679111 2 GCST90662892 no MR -> candidate analysis
Total cholesterol levels 5e-58 rs360804 17 GCST90662895 no MR -> candidate analysis
Low density lipoprotein cholesterol levels 5e-54 rs360804 10 GCST90239655 no MR -> candidate analysis
Non-HDL cholesterol levels 2e-43 rs189671 2 GCST90239667 no MR -> candidate analysis
Gamma glutamyl transferase levels 3e-27 rs12989754 3 GCST90662899 no MR -> candidate analysis
Hematological traits (multi-trait analysis) 3e-26 rs13007041 1 GCST90838669 no MR -> candidate analysis
Drinks per week 5e-24 rs6739804 2 GCST90243989 no MR -> candidate analysis
LDL cholesterol levels 8e-23 rs4671447 9 GCST90244006 no MR -> candidate analysis
Prostate cancer 5e-22 rs721048 8 GCST006085 no MR -> candidate analysis
LDL cholesterol 1e-19 rs2710644 4 GCST90018961 no MR -> candidate analysis
LDL cholesterol levels x alcohol consumption (regular vs non 6e-19 rs360804 2 GCST008078 no MR -> candidate analysis
LDL cholesterol levels x alcohol consumption (drinkers vs no 1e-18 rs360804 2 GCST008079 no MR -> candidate analysis
…and 106 more traits (see JSON)          

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

Top diseases by Open Targets association (of 127 total). Associations are loci, not causal claims. The causal-status column is a four-state triage per pair: established (curated) = a curated clinical assertion exists (ClinGen/G2P/GEL/Orphanet/ClinVar — any validity level, MR adds little); exploratory rare-variant signal = ExWAS burden evidence without curation — a candidate NEW gene-disease relationship; common-variant locus = GWAS signal, classic pQTL-MR territory; multi-layer = burden+GWAS together, an allelic-series candidate (the strongest causal setup). Burden estimand is carrier-vs-noncarrier, not per-SD MR.

Disease genetic assoc. burden (ExWAS) causal status MR status
prostate carcinoma 0.699 common-variant locus no MR -> candidate analysis
Abnormality of the skeletal system 0.681 common-variant locus no MR -> candidate analysis
Familial prostate cancer 0.195 established (curated) no MR -> candidate analysis
essential tremor 0.613 common-variant locus no MR -> candidate analysis
metabolic disease 0.601 common-variant locus no MR -> candidate analysis
coronary artery disorder 0.578 common-variant locus no MR -> candidate analysis
alcohol drinking 0.515 common-variant locus no MR -> candidate analysis
hyperlipidemia 0.502 common-variant locus no MR -> candidate analysis
prostate cancer 0.481 common-variant locus no MR -> candidate analysis
lower urinary tract calculus 0.482 common-variant locus no MR -> candidate analysis
myocardial infarction 0.47 common-variant locus MR: beta=0.0661, p=0.335 (trans)
metabolic syndrome 0.441 common-variant locus no MR -> candidate analysis
physical activity 0.454 common-variant locus no MR -> candidate analysis
obesity disorder 0.452 common-variant locus no MR -> candidate analysis
response to statin 0.452 common-variant locus no MR -> candidate analysis

Of the 15 rows above, 14 have no MR estimate in this resource. Across all retrieved diseases for this gene: 0 exploratory rare-variant signal(s), 0 multi-layer (allelic-series candidate) pair(s). Final triage still belongs to a statistical geneticist.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability not available — no ChEMBL target (undrugged)
gnomAD constraint pLI=0.98, LOEUF=0.478 — LoF-INTOLERANT
GWAS Catalog 108 unique SNPs / 252 rows
ClinVar 230 records; 1 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance