CausalSentinel

Protein Dossier — GSTO1 (Glutathione S-transferase omega-1)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Happiness 0.0124 0.00341 2.80e-04 Wald ratio 1 cis NA
Ischemic stroke 0.0597 0.0184 0.0012 Wald ratio 1 cis NA
Forced expiratory volume in 1-second (FEV1) -0.00748 0.00238 0.0017 Wald ratio 1 cis NA
Diagnoses - main ICD10: R07 Pain in throat and chest 0.037 0.0118 0.00175 Wald ratio 1 cis NA
Depressive symptoms 0.0132 0.00439 0.0027 Wald ratio 1 cis NA
Schizophrenia 0.0338 0.0121 0.00511 Wald ratio 1 cis NA
Mean platelet volume 0.00439 0.00165 0.00766 Wald ratio 1 cis NA
Subjective well being -0.00878 0.00329 0.00766 Wald ratio 1 cis NA
Lung adenocarcinoma -0.0867 0.0335 0.00962 Wald ratio 1 cis NA
Bulimia nervosa 0.022 0.00878 0.0124 Wald ratio 1 cis NA
Diagnoses - main ICD10: R10 Abdominal and pelvic pain 0.0308 0.0129 0.0168 Wald ratio 1 cis NA
Age at menarche -0.0154 0.00671 0.022 Wald ratio 1 cis NA
…and 103 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

No prot-* pQTL GWAS dataset found for this protein (matched by UniProt accession and symbol).

3. GWAS Catalog results — traits with signal at this locus

15 association rows across 14 traits (14 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Glutathione S-transferase omega-1 levels (GSTO1.12436.84.3) 2e-437 rs2282326 2 GCST90241286 no MR -> candidate analysis
Serum levels of protein GSTO1 4e-265 rs2282326 1 GCST90086982 no MR -> candidate analysis
Blood protein levels 3e-139 rs1147611 1 GCST006585 no MR -> candidate analysis
Cerebrospinal fluid metabolite X-25855 levels 9e-45 rs34521730 1 GCST90318336 no MR -> candidate analysis
Type 2 diabetes 1e-23 rs2164624 1 GCST90134620 no MR -> candidate analysis
Glutathione S-transferase omega-1 level in Chronic kidney di 4e-22 rs634013 1 GCST90233458 no MR -> candidate analysis
Spermatogenesis-associated protein 24 protein levels (SomaSc 9e-19 rs2282326 1 GCST90438390 no MR -> candidate analysis
Brain metabolite X-25855 levels 6e-17 rs17885241 1 GCST90319110 no MR -> candidate analysis
GSTO1 protein levels 2e-16 rs11191968 1 GCST90453259 no MR -> candidate analysis
Protein quantitative trait loci (liver) 4e-13 rs71473516 1 GCST011427 no MR -> candidate analysis
Uterine fibroids 4e-9 rs145973216 1 GCST90461959 MR: beta=-0.0349, p=0.13 (cis)
Diastolic blood pressure (MTAG) 3e-8 rs628480 1 GCST90449057 no MR -> candidate analysis
…and 2 more traits (see JSON)          

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

Top diseases by Open Targets association (of 227 total). Associations are loci, not causal claims. The causal-status column is a four-state triage per pair: established (curated) = a curated clinical assertion exists (ClinGen/G2P/GEL/Orphanet/ClinVar — any validity level, MR adds little); exploratory rare-variant signal = ExWAS burden evidence without curation — a candidate NEW gene-disease relationship; common-variant locus = GWAS signal, classic pQTL-MR territory; multi-layer = burden+GWAS together, an allelic-series candidate (the strongest causal setup). Burden estimand is carrier-vs-noncarrier, not per-SD MR.

Disease genetic assoc. burden (ExWAS) causal status MR status
type 2 diabetes mellitus 0.42 common-variant locus no MR -> candidate analysis
female genital tract polyp 0.066 common-variant locus no MR -> candidate analysis
thyroid gland carcinoma 0.055 common-variant locus no MR -> candidate analysis

Of the 3 rows above, 3 have no MR estimate in this resource. Across all retrieved diseases for this gene: 0 exploratory rare-variant signal(s), 0 multi-layer (allelic-series candidate) pair(s). Final triage still belongs to a statistical geneticist.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability 0 known modulators (Glutathione S-transferase omega-1)
gnomAD constraint pLI=7.9e-11, LOEUF=1.56 — LoF-tolerant
GWAS Catalog 37 unique SNPs / 73 rows
ClinVar 61 records; 2 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance