CausalSentinel

Protein Dossier — HIBCH (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Diastolic blood pressure automated reading 0.0127 0.00397 0.00141 Wald ratio 1 cis NA
Pulse rate 0.0215 0.00685 0.00168 Wald ratio 1 cis NA
Diagnoses - main ICD10: M16 Coxarthrosis [arthrosis of hip] 0.0871 0.0296 0.00325 Wald ratio 1 cis NA
Systolic blood pressure automated reading 0.011 0.00397 0.00538 Wald ratio 1 cis NA
Non-cancer illness code self-reported: hypothyroidism or myxoedema -0.0505 0.0181 0.00538 Wald ratio 1 cis NA
Rheumatoid arthritis -0.0622 0.0233 0.00772 Wald ratio 1 cis NA
Diagnoses - main ICD10: I83 Varicose veins of lower extremities 0.0663 0.0253 0.00894 Wald ratio 1 cis NA
HOMA-IR -0.0157 0.00634 0.0133 Wald ratio 1 cis NA
Non-cancer illness code self-reported: high cholesterol 0.0229 0.0102 0.0255 Wald ratio 1 cis NA
Diagnoses - main ICD10: K35 Acute appendicitis -0.14 0.0643 0.0296 Wald ratio 1 cis NA
HDL cholesterol 0.0158 0.00761 0.0372 Wald ratio 1 cis NA
Serum cystatin C (eGFRcys) 0.00586 0.00285 0.0398 Wald ratio 1 cis NA
…and 105 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

No prot-* pQTL GWAS dataset found for this protein (matched by UniProt accession and symbol).

3. GWAS Catalog results — traits with signal at this locus

31 association rows across 22 traits (27 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Serum levels of protein HIBCH 2e-258 rs291444 1 GCST90086956 no MR -> candidate analysis
Methylmalonate (mma) levels 9e-168 rs291459 1 GCST90140220 no MR -> candidate analysis
Blood protein levels 3e-152 rs291447 1 GCST006585 no MR -> candidate analysis
3-hydroxyisobutyryl-CoA hydrolase, mitochondrial levels 1e-137 rs291466 2 GCST90421688 no MR -> candidate analysis
Cerebrospinal fluid methylmalonate (MMA) levels 2e-87 rs291429 1 GCST90318243 no MR -> candidate analysis
INPP1 protein levels 2e-77 rs141472596 1 GCST90469616 no MR -> candidate analysis
Plasma methylmalonate (MMA) levels in chronic kidney disease 6e-58 rs291466 1 GCST90265503 no MR -> candidate analysis
Bone mineral density mean 6e-49 rs112946311 2 GCST90321120 no MR -> candidate analysis
Urine methylmalonate (MMA) levels in chronic kidney disease 9e-43 rs291468 1 GCST90265504 no MR -> candidate analysis
Protein quantitative trait loci (liver) 5e-37 rs1361284625 6 GCST011427 no MR -> candidate analysis
3-hydroxyisobutyryl-CoA hydrolase, mitochondrial level in Ch 1e-26 rs291430 1 GCST90233434 no MR -> candidate analysis
Urinary metabolites 2e-20 rs13006833 1 GCST003119 no MR -> candidate analysis
…and 10 more traits (see JSON)          

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

Top diseases by Open Targets association (of 131 total). Associations are loci, not causal claims. The causal-status column is a four-state triage per pair: established (curated) = a curated clinical assertion exists (ClinGen/G2P/GEL/Orphanet/ClinVar — any validity level, MR adds little); exploratory rare-variant signal = ExWAS burden evidence without curation — a candidate NEW gene-disease relationship; common-variant locus = GWAS signal, classic pQTL-MR territory; multi-layer = burden+GWAS together, an allelic-series candidate (the strongest causal setup). Burden estimand is carrier-vs-noncarrier, not per-SD MR.

Disease genetic assoc. burden (ExWAS) causal status MR status
3-hydroxyisobutyryl-CoA hydrolase deficiency 0.864 established (curated) no MR -> candidate analysis
Neurodegeneration due to 3-hydroxyisobutyryl-CoA hydrolase deficiency 0.608 established (curated) no MR -> candidate analysis
hereditary disease 0.783 established (curated) no MR -> candidate analysis
liver disorder 0.557 common-variant locus no MR -> candidate analysis
cervical carcinoma 0.419 common-variant locus no MR -> candidate analysis
placental retention 0.404 common-variant locus no MR -> candidate analysis
mitochondrial disease 0.195 established (curated) no MR -> candidate analysis
hypothyroidism 0.089 common-variant locus MR: beta=-0.0505, p=0.00538 (cis)
bronchial disorder 0.061 common-variant locus no MR -> candidate analysis
upper extremity fracture 0.052 common-variant locus no MR -> candidate analysis
hypertensive disorder 0.05 common-variant locus no MR -> candidate analysis
juvenile idiopathic arthritis 0.046 common-variant locus no MR -> candidate analysis
thyroid gland disorder 0.046 common-variant locus no MR -> candidate analysis
systemic lupus erythematosus 0.043 common-variant locus MR: beta=-0.122, p=0.1 (cis)
atopic eczema 0.042 common-variant locus no MR -> candidate analysis

Of the 15 rows above, 13 have no MR estimate in this resource. Across all retrieved diseases for this gene: 0 exploratory rare-variant signal(s), 0 multi-layer (allelic-series candidate) pair(s). Final triage still belongs to a statistical geneticist.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability 0 known modulators (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial)
gnomAD constraint pLI=3.7e-15, LOEUF=1.09 — LoF-tolerant
GWAS Catalog 64 unique SNPs / 126 rows
ClinVar 324 records; 3 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance