CausalSentinel

Protein Dossier — IL17RD (Interleukin-17 receptor D)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Forced expiratory volume in 1-second (FEV1) 0.0218 0.00494 1.04e-05 Wald ratio 1 cis NA
Heel bone mineral density (BMD) T-score automated 0.0308 0.00739 3.06e-05 Wald ratio 1 cis NA
Major depressive disorder -0.19 0.0502 1.48e-04 Wald ratio 1 cis NA
Forced vital capacity (FVC) 0.0176 0.00469 1.69e-04 Wald ratio 1 cis NA
Bipolar disorder -0.183 0.0565 0.00121 Wald ratio 1 cis NA
HOMA-B -0.0216 0.008 0.00688 Wald ratio 1 cis NA
Diagnoses - main ICD10: S76 Injury of muscle and tendon at hip and thigh level 0.461 0.178 0.00952 Wald ratio 1 cis NA
Diagnoses - main ICD10: N92 Excessive frequent and irregular menstruation 0.094 0.0362 0.00952 Wald ratio 1 cis NA
Packed cell volume -0.114 0.0454 0.0123 Wald ratio 1 cis NA
Haemoglobin concentration -0.0374 0.0151 0.0135 Wald ratio 1 cis NA
Autism 0.163 0.0666 0.0147 Wald ratio 1 cis NA
Red blood cell count -0.0138 0.00584 0.0178 Wald ratio 1 cis NA
…and 108 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

Dataset Trait Author Year
prot-c-3376_49_2 IL-17 RD Suhre K 2019

3. GWAS Catalog results — traits with signal at this locus

48 association rows across 30 traits (46 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Interleukin-17 receptor D levels 8e-422 rs76645245 7 GCST90248043 no MR -> candidate analysis
Interleukin-17 receptor D levels (IL17RD.3376.49.2) 3e-74 rs6776722 2 GCST90241600 no MR -> candidate analysis
Serum levels of protein IL17RD 4e-74 rs2035656 2 GCST90088350 no MR -> candidate analysis
Mean platelet thrombocyte volume (UKB data field 30100) 3e-57 rs73082974 2 GCST90468087 no MR -> candidate analysis
Height 6e-38 rs17216893 9 GCST90245848 MR: beta=0.0125, p=0.088 (cis)
Blood protein levels 9e-37 rs59527464 1 GCST006585 no MR -> candidate analysis
Interleukin-17 receptor D level in Chronic kidney disease wi 1e-21 rs6780995 1 GCST90237348 no MR -> candidate analysis
Prostaglandin-H2 D-isomerase protein levels (SomaScan ID:337 4e-18 rs11916303 1 GCST90442822 no MR -> candidate analysis
Cortical surface area 2e-16 rs17235841 1 GCST90091060 no MR -> candidate analysis
Physical function (baseline) 9e-16 rs56164953 2 GCST90565837 no MR -> candidate analysis
Vertex-wise cortical surface area 2e-15 rs17235841 1 GCST90095130 no MR -> candidate analysis
FEV1 2e-13 rs12494525 1 GCST90270081 MR: beta=0.0218, p=1.04e-05 (cis)
…and 18 more traits (see JSON)          

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

Top diseases by Open Targets association (of 332 total). Associations are loci, not causal claims. The causal-status column is a four-state triage per pair: established (curated) = a curated clinical assertion exists (ClinGen/G2P/GEL/Orphanet/ClinVar — any validity level, MR adds little); exploratory rare-variant signal = ExWAS burden evidence without curation — a candidate NEW gene-disease relationship; common-variant locus = GWAS signal, classic pQTL-MR territory; multi-layer = burden+GWAS together, an allelic-series candidate (the strongest causal setup). Burden estimand is carrier-vs-noncarrier, not per-SD MR.

Disease genetic assoc. burden (ExWAS) causal status MR status
Kallmann syndrome 0.853 established (curated) no MR -> candidate analysis
hypogonadotropic hypogonadism 18 with or without anosmia 0.587 established (curated) no MR -> candidate analysis
Abnormality of the skeletal system 0.624 common-variant locus no MR -> candidate analysis
Delayed puberty 0.596 established (curated) no MR -> candidate analysis
chronic obstructive pulmonary disease 0.483 common-variant locus no MR -> candidate analysis
Cerebral arteriovenous malformation 0.486 established (curated) no MR -> candidate analysis
asthma 0.483 common-variant locus MR: beta=-0.0222, p=0.175 (cis)
placenta praevia 0.235 common-variant locus no MR -> candidate analysis
hypogonadotropic hypogonadism 0.195 established (curated) no MR -> candidate analysis
hypogonadism 0.195 established (curated) no MR -> candidate analysis

Of the 10 rows above, 9 have no MR estimate in this resource. Across all retrieved diseases for this gene: 0 exploratory rare-variant signal(s), 0 multi-layer (allelic-series candidate) pair(s). Final triage still belongs to a statistical geneticist.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability not available — no ChEMBL target (undrugged)
gnomAD constraint pLI=2.9e-11, LOEUF=0.813 — LoF-tolerant
GWAS Catalog 56 unique SNPs / 112 rows
ClinVar 330 records; 0 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance