CausalSentinel

Protein Dossier — IL18R1 (Interleukin-18 receptor 1)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Crohn’s disease 0.114 0.0156 2.25e-13 Wald ratio 1 cis 4.67e-07
Inflammatory bowel disease 0.0862 0.013 2.84e-11 Wald ratio 1 cis 1.55e-07
Eczema 0.13 0.0218 2.78e-09 Wald ratio 1 cis 0.931
Platelet count -1.69 0.53 0.00146 Wald ratio 1 cis NA
Glioma -0.175 0.0566 0.00197 Wald ratio 1 cis NA
Urinary albumin-to-creatinine ratio -0.022 0.00782 0.00485 Wald ratio 1 cis NA
Ulcerative colitis 0.0418 0.0164 0.0107 Wald ratio 1 cis NA
Diagnoses - main ICD10: M72 Fibroblastic disorders 0.0997 0.0393 0.0111 Wald ratio 1 cis NA
Diagnoses - main ICD10: R07 Pain in throat and chest 0.0344 0.0137 0.0122 Wald ratio 1 cis NA
Mean cell volume 0.0804 0.0324 0.013 Wald ratio 1 cis NA
Diagnoses - main ICD10: G47 Sleep disorders -0.115 0.0467 0.0138 Wald ratio 1 cis NA
Non-cancer illness code self-reported: vitiligo 0.342 0.14 0.0148 Wald ratio 1 cis NA
…and 89 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

Dataset Trait Author Year
prot-c-3446_7_2 IL-18 Ra Suhre K 2019

3. GWAS Catalog results — traits with signal at this locus

284 association rows across 121 traits (273 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Circulating IL18R1 levels 1e-4635 rs12712145 5 GCST90859873 no MR -> candidate analysis
Circulating IL1RL1 levels 9e-1796 rs13029918 4 GCST90859979 no MR -> candidate analysis
ST2 protein levels 7e-1635 rs13020553 5 GCST90012040 no MR -> candidate analysis
interleukin-18 receptor 1 levels 6e-996 rs2270297 8 GCST90274804 no MR -> candidate analysis
Interleukin-18 receptor 1 (analyte X3446.7) levels 5e-611 rs12712135 1 GCST90425769 no MR -> candidate analysis
Interleukin-18 receptor 1 (analyte X14079.14) levels 1e-576 rs12712135 1 GCST90422451 no MR -> candidate analysis
Cerebrospinal fluid protein IL18R1 levels 5e-367 rs12996505 1 GCST90943509 no MR -> candidate analysis
Eosinophil count 6e-305 rs9807989 17 GCST90002302 no MR -> candidate analysis
Serum levels of protein IL1RL1 1e-296 rs11676124 2 GCST90088634 no MR -> candidate analysis
Eosinophill percentage (UKB data field 30210) 9e-285 rs9807989 1 GCST90468069 no MR -> candidate analysis
eosinophil (fraction, mean, inv-norm transformed) 2e-269 rs13019081 3 GCST90475300 no MR -> candidate analysis
Interleukin-1 receptor-like 1 levels 3e-257 rs13029918 10 GCST90248051 no MR -> candidate analysis
…and 109 more traits (see JSON)          

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

Top diseases by Open Targets association (of 438 total). Associations are loci, not causal claims. The causal-status column is a four-state triage per pair: established (curated) = a curated clinical assertion exists (ClinGen/G2P/GEL/Orphanet/ClinVar — any validity level, MR adds little); exploratory rare-variant signal = ExWAS burden evidence without curation — a candidate NEW gene-disease relationship; common-variant locus = GWAS signal, classic pQTL-MR territory; multi-layer = burden+GWAS together, an allelic-series candidate (the strongest causal setup). Burden estimand is carrier-vs-noncarrier, not per-SD MR.

Disease genetic assoc. burden (ExWAS) causal status MR status
Ascending aortic dissection 0.827 established (curated) no MR -> candidate analysis
Wheezing 0.781 common-variant locus no MR -> candidate analysis
Behcet disease 0.761 established (curated) no MR -> candidate analysis
asthma 0.732 common-variant locus no MR -> candidate analysis
Eczematoid dermatitis 0.687 common-variant locus no MR -> candidate analysis
atopic eczema 0.695 common-variant locus no MR -> candidate analysis
ulcerative colitis 0.652 common-variant locus MR: beta=0.0418, p=0.0107 (cis)
Crohn disease 0.594 common-variant locus no MR -> candidate analysis
dermatitis 0.571 common-variant locus no MR -> candidate analysis
inflammatory bowel disease 0.559 common-variant locus MR: beta=0.0862, p=2.84e-11 (cis)
chronic obstructive pulmonary disease 0.541 common-variant locus no MR -> candidate analysis
celiac disease 0.56 common-variant locus no MR -> candidate analysis
lower respiratory tract disorder 0.557 common-variant locus no MR -> candidate analysis
psoriasis 0.522 common-variant locus MR: beta=-0.039, p=0.211 (cis)
nasal cavity polyp 0.539 common-variant locus no MR -> candidate analysis

Of the 15 rows above, 12 have no MR estimate in this resource. Across all retrieved diseases for this gene: 0 exploratory rare-variant signal(s), 0 multi-layer (allelic-series candidate) pair(s). Final triage still belongs to a statistical geneticist.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability 1 known modulators (IL18 Receptor)
gnomAD constraint pLI=6.9e-12, LOEUF=1.07 — LoF-tolerant
GWAS Catalog 215 unique SNPs / 545 rows
ClinVar 83 records; 0 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance