CausalSentinel

Protein Dossier — IL18RAP (Interleukin-18 receptor accessory protein)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Diagnoses - main ICD10: G56 Mononeuropathies of upper limb 0.119 0.0363 0.00105 Wald ratio 1 cis NA
Non-cancer illness code self-reported: muscle or soft tissue injuries 0.156 0.0544 0.0042 Wald ratio 1 cis NA
Urate 0.0309 0.0119 0.0097 Wald ratio 1 cis NA
Diagnoses - main ICD10: J33 Nasal polyp -0.249 0.101 0.0139 Wald ratio 1 cis NA
Chronic kidney disease 0.0803 0.033 0.0148 Wald ratio 1 cis NA
Percent emphysema 0.0513 0.0229 0.0249 Wald ratio 1 cis NA
Coronary heart disease 0.05 0.0224 0.0255 Wald ratio 1 cis NA
Non-cancer illness code self-reported: hayfever or allergic rhinitis -0.0508 0.0232 0.0288 Wald ratio 1 cis NA
Diagnoses - main ICD10: M16 Coxarthrosis [arthrosis of hip] -0.109 0.0499 0.029 Wald ratio 1 cis NA
Serum creatinine (eGFRcrea) -0.00412 0.0019 0.0297 Wald ratio 1 cis NA
Childhood intelligence -0.0626 0.0288 0.0299 Wald ratio 1 cis NA
Platelet count 1.82 0.887 0.0406 Wald ratio 1 cis NA
…and 96 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

Dataset Trait Author Year
prot-c-2993_1_2 IL-18 Rb Suhre K 2019

3. GWAS Catalog results — traits with signal at this locus

83 association rows across 47 traits (78 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Interleukin-18 receptor 1 levels (IL18R1.3446.7.2) 1e-273 rs1420106 1 GCST90241607 no MR -> candidate analysis
IL1RL1 protein levels 7e-218 rs115725744 4 GCST90469574 no MR -> candidate analysis
Hematological traits (multi-trait analysis) 3e-213 rs4479442 1 GCST90838669 no MR -> candidate analysis
interleukin-18 receptor 1 levels 1e-133 rs1807782 1 GCST90161790 no MR -> candidate analysis
Atopic dermatitis 2e-100 rs2272128 9 GCST90244787 no MR -> candidate analysis
Interleukin-1 receptor-like 1 levels 7e-98 rs397868590 3 GCST90248051 no MR -> candidate analysis
IL18R1 protein levels 5e-50 rs181156130 9 GCST90469565 no MR -> candidate analysis
Interleukin-18 receptor accessory protein levels 1e-40 rs6748390 3 GCST90137708 no MR -> candidate analysis
Asthma or irritable bowel syndrome (MTAG) 2e-37 rs3755265 1 GCST90570612 no MR -> candidate analysis
ST2 levels 9e-36 rs11465729 1 GCST90274911 no MR -> candidate analysis
Lymphocyte count 4e-32 rs6755786 6 GCST90002316 no MR -> candidate analysis
Eosinophil count 5e-32 rs34020101 2 GCST004606 no MR -> candidate analysis
…and 35 more traits (see JSON)          

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

Top diseases by Open Targets association (of 525 total). Associations are loci, not causal claims. The causal-status column is a four-state triage per pair: established (curated) = a curated clinical assertion exists (ClinGen/G2P/GEL/Orphanet/ClinVar — any validity level, MR adds little); exploratory rare-variant signal = ExWAS burden evidence without curation — a candidate NEW gene-disease relationship; common-variant locus = GWAS signal, classic pQTL-MR territory; multi-layer = burden+GWAS together, an allelic-series candidate (the strongest causal setup). Burden estimand is carrier-vs-noncarrier, not per-SD MR.

Disease genetic assoc. burden (ExWAS) causal status MR status
asthma 0.766 common-variant locus no MR -> candidate analysis
atopic eczema 0.71 common-variant locus no MR -> candidate analysis
inflammatory bowel disease 0.679 common-variant locus MR: beta=0.0269, p=0.237 (cis)
Ascending aortic dissection 0.684 established (curated) no MR -> candidate analysis
Crohn disease 0.668 common-variant locus no MR -> candidate analysis
chronic rhinosinusitis 0.629 common-variant locus no MR -> candidate analysis
ulcerative colitis 0.545 common-variant locus MR: beta=0.0386, p=0.176 (cis)
Eczematoid dermatitis 0.529 common-variant locus no MR -> candidate analysis
skin disorder 0.511 common-variant locus no MR -> candidate analysis
celiac disease 0.476 common-variant locus no MR -> candidate analysis
dermatitis 0.457 common-variant locus no MR -> candidate analysis
lichen planus 0.415 common-variant locus no MR -> candidate analysis
seborrheic keratosis 0.409 common-variant locus no MR -> candidate analysis
allergic rhinitis 0.364 common-variant locus MR: beta=-0.0508, p=0.0288 (cis)
atopic conjunctivitis 0.334 common-variant locus no MR -> candidate analysis

Of the 15 rows above, 12 have no MR estimate in this resource. Across all retrieved diseases for this gene: 0 exploratory rare-variant signal(s), 0 multi-layer (allelic-series candidate) pair(s). Final triage still belongs to a statistical geneticist.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability 1 known modulators (IL18 Receptor)
gnomAD constraint pLI=3.9e-08, LOEUF=0.838 — LoF-tolerant
GWAS Catalog 159 unique SNPs / 456 rows
ClinVar 104 records; 0 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance