CausalSentinel

Protein Dossier — IL27RA (Interleukin-27 receptor subunit alpha)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Sleep duration 0.00751 0.0026 0.00389 Wald ratio 1 cis NA
Non-cancer illness code self-reported: depression 0.0322 0.0133 0.0154 Wald ratio 1 cis NA
Non-cancer illness code self-reported: hypothyroidism or myxoedema -0.0366 0.0154 0.0172 Wald ratio 1 cis NA
Diagnoses - main ICD10: M54 Dorsalgia 0.0548 0.0245 0.0252 Wald ratio 1 cis NA
Non-cancer illness code self-reported: bone disorder 0.139 0.0621 0.0253 Wald ratio 1 cis NA
Endometrioid ovarian cancer 0.108 0.0484 0.0261 Wald ratio 1 cis NA
Diagnoses - main ICD10: H25 Senile cataract 0.0766 0.0352 0.0296 Wald ratio 1 cis NA
Non-cancer illness code self-reported: uterine fibroids -0.0598 0.0286 0.0364 Wald ratio 1 cis NA
Non-cancer illness code self-reported: hiatus hernia 0.0431 0.0209 0.0396 Wald ratio 1 cis NA
Non-cancer illness code self-reported: mania or bipolar disorder or manic depression 0.114 0.0584 0.0509 Wald ratio 1 cis NA
Diagnoses - main ICD10: K43 Ventral hernia -0.101 0.0555 0.0674 Wald ratio 1 cis NA
Eye problems or disorders: Diabetes related eye disease 0.0709 0.0398 0.0744 Wald ratio 1 cis NA
…and 62 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

Dataset Trait Author Year
prot-c-5132_71_3 TCCR Suhre K 2019

3. GWAS Catalog results — traits with signal at this locus

28 association rows across 20 traits (28 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Interleukin-27 receptor subunit alpha levels 4e-542 rs35026308 5 GCST90248067 no MR -> candidate analysis
Interleukin-27 receptor subunit alpha levels (IL27RA.5132.71 4e-239 rs35026308 1 GCST90241627 no MR -> candidate analysis
Serum levels of protein IL27RA 3e-199 rs35026308 1 GCST90088948 no MR -> candidate analysis
Mitochondrial ubiquitin ligase activator of NFKB 1:Cytoplasm 4e-25 rs35026308 1 GCST90441052 no MR -> candidate analysis
Cerebrospinal fluid biomarker levels 3e-15 rs35026308 1 GCST004000 no MR -> candidate analysis
Neutrophil percentage of white cells 1e-14 rs35026308 1 GCST90002399 no MR -> candidate analysis
Lymphocyte count 2e-13 rs35026308 1 GCST90002388 no MR -> candidate analysis
Platelet count 3e-13 rs35018855 3 GCST90662907 no MR -> candidate analysis
Lymphocyte count (UKB data field 30120) 1e-12 rs35026308 1 GCST90468082 no MR -> candidate analysis
Platelet count (UKB data field 30080) 1e-12 rs2306191 1 GCST90468095 no MR -> candidate analysis
Lymphocyte percentage of white cells 3e-12 rs35026308 1 GCST90002389 no MR -> candidate analysis
Platelet crit (UKB data field 30090) 5e-12 rs2306191 1 GCST90468096 no MR -> candidate analysis
…and 8 more traits (see JSON)          

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

Top diseases by Open Targets association (of 237 total). Associations are loci, not causal claims. The causal-status column is a four-state triage per pair: established (curated) = a curated clinical assertion exists (ClinGen/G2P/GEL/Orphanet/ClinVar — any validity level, MR adds little); exploratory rare-variant signal = ExWAS burden evidence without curation — a candidate NEW gene-disease relationship; common-variant locus = GWAS signal, classic pQTL-MR territory; multi-layer = burden+GWAS together, an allelic-series candidate (the strongest causal setup). Burden estimand is carrier-vs-noncarrier, not per-SD MR.

Disease genetic assoc. burden (ExWAS) causal status MR status
alcohol drinking 0.054 common-variant locus no MR -> candidate analysis

Of the 1 rows above, 1 have no MR estimate in this resource. Across all retrieved diseases for this gene: 0 exploratory rare-variant signal(s), 0 multi-layer (allelic-series candidate) pair(s). Final triage still belongs to a statistical geneticist.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability not available — no ChEMBL target (undrugged)
gnomAD constraint pLI=5.1e-16, LOEUF=0.935 — LoF-tolerant
GWAS Catalog 36 unique SNPs / 72 rows
ClinVar 138 records; 3 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance