CausalSentinel

Protein Dossier — KIAA2013 (Uncharacterized protein KIAA2013)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Neuroblastoma -0.814 0.242 7.49e-04 Wald ratio 1 cis NA
Alzheimer’s disease 0.287 0.0882 0.00113 Wald ratio 1 cis NA
Diagnoses - main ICD10: M17 Gonarthrosis [arthrosis of knee] 0.234 0.0781 0.00267 Wald ratio 1 cis NA
Non-cancer illness code self-reported: high cholesterol 0.092 0.0336 0.00616 Wald ratio 1 cis NA
Birth length -0.151 0.0562 0.00715 Wald ratio 1 cis NA
Vascular or heart problems diagnosed by doctor: Angina 0.173 0.0645 0.00746 Wald ratio 1 cis NA
Platelet count -6.07 2.33 0.00901 Wald ratio 1 cis NA
Diagnoses - main ICD10: G47 Sleep disorders 0.32 0.132 0.0149 Wald ratio 1 cis NA
Rheumatoid arthritis 0.166 0.0699 0.0176 Wald ratio 1 cis NA
Eye problems or disorders: Injury or trauma resulting in loss of vision 0.313 0.133 0.0184 Wald ratio 1 cis NA
Non-cancer illness code self-reported: hypothyroidism or myxoedema 0.117 0.054 0.0306 Wald ratio 1 cis NA
2hr glucose 0.23 0.107 0.0309 Wald ratio 1 cis NA
…and 98 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

No prot-* pQTL GWAS dataset found for this protein (matched by UniProt accession and symbol).

3. GWAS Catalog results — traits with signal at this locus

15 association rows across 14 traits (12 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Circulating NTproBNP levels (id: OID01214_OID20125) 2e-113 rs9787387 1 GCST90860419 no MR -> candidate analysis
Circulating NTproBNP levels (id: OID00455_OID20125) 3e-106 rs9787387 1 GCST90859816 no MR -> candidate analysis
Circulating NTproBNP levels (id: OID00131_OID20125) 1e-92 rs9787387 1 GCST90859652 no MR -> candidate analysis
Systolic blood pressure x alcohol consumption interaction (2 1e-15 rs71647019 1 GCST006434 no MR -> candidate analysis
Systolic blood pressure 2e-15 rs71647020 1 GCST90132903 no MR -> candidate analysis
Diastolic blood pressure x alcohol consumption interaction ( 6e-15 rs71647020 1 GCST006166 no MR -> candidate analysis
Hypertension 9e-13 rs12738237 2 GCST90446531 no MR -> candidate analysis
Other cerebral degenerations (PheCode 331) 3e-11 rs551075790 1 GCST90480007 no MR -> candidate analysis
Height 5e-10 rs2639453 1 GCST90245844 MR: beta=0.0135, p=0.424 (cis)
Alzheimer’s disease 9e-10 rs6682554 1 GCST90558104 MR: beta=0.287, p=0.00113 (cis)
ICD10 O13: Gestational hypertension 3e-9 rs143439093 1 GCST90454232 no MR -> candidate analysis
Red blood cell folate levels 5e-8 rs2639453 1 GCST007580 no MR -> candidate analysis
…and 2 more traits (see JSON)          

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

Top diseases by Open Targets association (of 12 total). Associations are loci, not causal claims. The causal-status column is a four-state triage per pair: established (curated) = a curated clinical assertion exists (ClinGen/G2P/GEL/Orphanet/ClinVar — any validity level, MR adds little); exploratory rare-variant signal = ExWAS burden evidence without curation — a candidate NEW gene-disease relationship; common-variant locus = GWAS signal, classic pQTL-MR territory; multi-layer = burden+GWAS together, an allelic-series candidate (the strongest causal setup). Burden estimand is carrier-vs-noncarrier, not per-SD MR.

Disease genetic assoc. burden (ExWAS) causal status MR status
Alzheimer disease 0.431 common-variant locus no MR -> candidate analysis
Cerebral degeneration 0.062 common-variant locus no MR -> candidate analysis
esophageal ulcer 0.044 common-variant locus no MR -> candidate analysis
osteoarthritis 0.04 common-variant locus no MR -> candidate analysis

Of the 4 rows above, 4 have no MR estimate in this resource. Across all retrieved diseases for this gene: 0 exploratory rare-variant signal(s), 0 multi-layer (allelic-series candidate) pair(s). Final triage still belongs to a statistical geneticist.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability not available — no ChEMBL target (undrugged)
gnomAD constraint pLI=0.0051, LOEUF=0.728 — LoF-tolerant
GWAS Catalog 119 unique SNPs / 324 rows
ClinVar 158 records; 1 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance