CausalSentinel

Protein Dossier — MIF (Anti-Muellerian hormone)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Non-cancer illness code self-reported: gout 0.143 0.0553 0.00957 Wald ratio 1 trans NA
Non-cancer illness code self-reported: bladder problem (not cancer) 0.184 0.0835 0.0276 Wald ratio 1 trans NA
Diagnoses - main ICD10: N20 Calculus of kidney and ureter -0.249 0.118 0.0345 Wald ratio 1 trans NA
Diagnoses - main ICD10: G47 Sleep disorders 0.174 0.0839 0.0381 Wald ratio 1 trans NA
Hirschsprung’s disease -0.947 0.461 0.04 Wald ratio 1 trans NA
Body fat -0.0344 0.0169 0.042 Wald ratio 1 trans NA
Underlying (primary) cause of death: ICD10: E85.4 Organ-limited amyloidosis 1.35 0.664 0.0421 Wald ratio 1 trans NA
Neo-neuroticism 0.576 0.294 0.0504 Wald ratio 1 trans NA
Neo-agreeableness -0.368 0.19 0.0526 Wald ratio 1 trans NA
Non-cancer illness code self-reported: hypertension 0.023 0.0127 0.0687 Wald ratio 1 trans NA
Lung cancer 0.106 0.0586 0.0701 Wald ratio 1 trans NA
Diagnoses - main ICD10: R14 Flatulence and related conditions 0.4 0.225 0.0752 Wald ratio 1 trans NA
…and 105 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

Dataset Trait Author Year
prot-c-4923_79_1 MIS Suhre K 2019
prot-c-5356_2_3 MIF Suhre K 2019

3. GWAS Catalog results — traits with signal at this locus

114 association rows across 70 traits (110 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Glutathione S-transferase theta-2B levels 2e-447 rs5751777 1 GCST90247824 no MR -> candidate analysis
Cerebrospinal fluid protein GSTT2B levels 2e-445 rs5751777 1 GCST90943447 no MR -> candidate analysis
MIF/PARK7 protein level ratio 1e-391 rs4822455 1 GCST90315447 no MR -> candidate analysis
MIF/STIP1 protein level ratio 1e-338 rs4822455 1 GCST90315451 no MR -> candidate analysis
Glutathione S-transferase theta-1 levels 2e-330 rs2000468 1 GCST90423466 no MR -> candidate analysis
MIF/PEBP1 protein level ratio 3e-298 rs4822455 1 GCST90315448 no MR -> candidate analysis
HARS1/MIF protein level ratio 6e-281 rs4822455 1 GCST90315024 no MR -> candidate analysis
FHIT/MIF protein level ratio 2e-255 rs4822455 1 GCST90314819 no MR -> candidate analysis
MIF/S100A4 protein level ratio 2e-242 rs4822455 1 GCST90315449 no MR -> candidate analysis
X-16071 levels 8e-241 rs5751777 1 GCST90245605 no MR -> candidate analysis
GLOD4/MIF protein level ratio 1e-184 rs4822455 1 GCST90314939 no MR -> candidate analysis
MIF/SERPINB1 protein level ratio 1e-176 rs4822455 1 GCST90315450 no MR -> candidate analysis
…and 58 more traits (see JSON)          

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

Top diseases by Open Targets association (of 1390 total). Associations are loci, not causal claims. The causal-status column is a four-state triage per pair: established (curated) = a curated clinical assertion exists (ClinGen/G2P/GEL/Orphanet/ClinVar — any validity level, MR adds little); exploratory rare-variant signal = ExWAS burden evidence without curation — a candidate NEW gene-disease relationship; common-variant locus = GWAS signal, classic pQTL-MR territory; multi-layer = burden+GWAS together, an allelic-series candidate (the strongest causal setup). Burden estimand is carrier-vs-noncarrier, not per-SD MR.

Disease genetic assoc. burden (ExWAS) causal status MR status
systemic-onset juvenile idiopathic arthritis 0.304 established (curated) no MR -> candidate analysis
cystic fibrosis 0.608 established (curated) no MR -> candidate analysis

Of the 2 rows above, 2 have no MR estimate in this resource. Across all retrieved diseases for this gene: 0 exploratory rare-variant signal(s), 0 multi-layer (allelic-series candidate) pair(s). Final triage still belongs to a statistical geneticist.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability 2 known modulators (Macrophage migration inhibitory factor)
gnomAD constraint pLI=1.2e-07, LOEUF=2.16 — LoF-tolerant
GWAS Catalog 112 unique SNPs / 276 rows
ClinVar 162 records; 2 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance