CausalSentinel

Protein Dossier — NOG (Noggin)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Non-cancer illness code self-reported: hypertrophic cardiomyopathy (hcm or hocm) 1 0.254 7.74e-05 Wald ratio 1 cis NA
Eye problems or disorders: Diabetes related eye disease 0.29 0.0891 0.00116 Wald ratio 1 cis NA
Non-cancer illness code self-reported: bone disorder 0.386 0.136 0.00468 Wald ratio 1 cis NA
Forced expiratory volume in 1-second (FEV1) -0.0204 0.00796 0.0103 Wald ratio 1 cis NA
Alcohol intake frequency 0.0308 0.0136 0.0234 Wald ratio 1 cis NA
Forced vital capacity (FVC) -0.0169 0.00755 0.0253 Wald ratio 1 cis NA
Diagnoses - main ICD10: N81 Female genital prolapse -0.211 0.0959 0.0279 Wald ratio 1 cis NA
Diagnoses - main ICD10: M54 Dorsalgia 0.131 0.0629 0.0378 Wald ratio 1 cis NA
Non-cancer illness code self-reported: migraine 0.0977 0.0483 0.0431 Wald ratio 1 cis NA
Diagnoses - main ICD10: R14 Flatulence and related conditions 0.477 0.256 0.0628 Wald ratio 1 cis NA
Diagnoses - main ICD10: I84 Haemorrhoids -0.117 0.0668 0.0793 Wald ratio 1 cis NA
Endometrioid ovarian cancer 0.211 0.133 0.113 Wald ratio 1 cis NA
…and 59 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

No prot-* pQTL GWAS dataset found for this protein (matched by UniProt accession and symbol).

3. GWAS Catalog results — traits with signal at this locus

167 association rows across 88 traits (142 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Height 1e-300 rs1401796 32 GCST90245843 no MR -> candidate analysis
Noggin levels 3e-170 rs76164057 2 GCST90248705 no MR -> candidate analysis
Standing height (UKB data field 50) 3e-64 rs9908159 4 GCST90468178 no MR -> candidate analysis
Body size or adipose distribution (multivariate analysis) 1e-51 rs1401795 1 GCST90624105 no MR -> candidate analysis
Height (baseline) 2e-50 rs963292 9 GCST90565843 no MR -> candidate analysis
height (mean, inv-normal transformed) 2e-49 rs12602666 1 GCST90479635 no MR -> candidate analysis
Height (maximum, inv-normal transformed) 2e-49 rs12602666 1 GCST90479634 no MR -> candidate analysis
height (minimum, inv-normal transformed) 1e-47 rs12602666 1 GCST90479636 no MR -> candidate analysis
Refractive error 2e-45 rs1986023 5 GCST90841193 no MR -> candidate analysis
Serum levels of protein NOG 1e-40 rs35250090 2 GCST90090292 no MR -> candidate analysis
Body shape phenotype PC2 2e-39 rs963292 2 GCST90832990 no MR -> candidate analysis
Peak expiratory flow 9e-34 rs62074819 2 GCST90244095 no MR -> candidate analysis
…and 76 more traits (see JSON)          

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

Top diseases by Open Targets association (of 2471 total). Associations are loci, not causal claims. The causal-status column is a four-state triage per pair: established (curated) = a curated clinical assertion exists (ClinGen/G2P/GEL/Orphanet/ClinVar — any validity level, MR adds little); exploratory rare-variant signal = ExWAS burden evidence without curation — a candidate NEW gene-disease relationship; common-variant locus = GWAS signal, classic pQTL-MR territory; multi-layer = burden+GWAS together, an allelic-series candidate (the strongest causal setup). Burden estimand is carrier-vs-noncarrier, not per-SD MR.

Disease genetic assoc. burden (ExWAS) causal status MR status
proximal symphalangism 1A 0.922 established (curated) no MR -> candidate analysis
brachydactyly type B2 0.855 established (curated) no MR -> candidate analysis
multiple synostoses syndrome 1 0.843 established (curated) no MR -> candidate analysis
tarsal-carpal coalition syndrome 0.803 established (curated) no MR -> candidate analysis
stapes ankylosis with broad thumbs and toes 0.788 established (curated) no MR -> candidate analysis
multiple synostoses syndrome 0.608 established (curated) no MR -> candidate analysis
proximal symphalangism 0.608 established (curated) no MR -> candidate analysis
hereditary disease 0.81 established (curated) no MR -> candidate analysis
Progressive visual loss 0.526 common-variant locus no MR -> candidate analysis
amyotrophic lateral sclerosis 0.517 common-variant locus MR: beta=-0.107, p=0.177 (cis)
placenta praevia 0.51 common-variant locus no MR -> candidate analysis
Bethlem myopathy 2 0.438 established (curated) no MR -> candidate analysis
ventral hernia 0.408 common-variant locus no MR -> candidate analysis
cleft lip 0.385 common-variant locus no MR -> candidate analysis
Micrognathia 0.365 common-variant locus no MR -> candidate analysis

Of the 15 rows above, 14 have no MR estimate in this resource. Across all retrieved diseases for this gene: 0 exploratory rare-variant signal(s), 0 multi-layer (allelic-series candidate) pair(s). Final triage still belongs to a statistical geneticist.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability not available — no ChEMBL target (undrugged)
gnomAD constraint pLI=1, LOEUF=0.353 — LoF-INTOLERANT
GWAS Catalog 101 unique SNPs / 203 rows
ClinVar 266 records; 5 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance