CausalSentinel

Protein Dossier — OAF (Out at first protein homolog)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Cough on most days 0.0888 0.0292 0.0024 Wald ratio 1 cis NA
Neuroticism 0.0235 0.0088 0.00766 Wald ratio 1 cis NA
Depressive symptoms 0.0235 0.0117 0.0455 Wald ratio 1 cis NA
High grade serous ovarian cancer 0.0738 0.0419 0.0786 Wald ratio 1 cis NA
Body mass index (BMI) -0.0108 0.00625 0.084 Wald ratio 1 cis NA
Weight -0.00928 0.00552 0.0927 Wald ratio 1 cis NA
Fractured bone site(s): Ankle -0.0979 0.059 0.0971 Wald ratio 1 cis NA
Diagnoses - main ICD10: N40 Hyperplasia of prostate -0.117 0.0736 0.111 Wald ratio 1 cis NA
Diagnoses - main ICD10: N92 Excessive frequent and irregular menstruation 0.0631 0.0409 0.123 Wald ratio 1 cis NA
Non-cancer illness code self-reported: pernicious anaemia -0.215 0.146 0.142 Wald ratio 1 cis NA
Diagnoses - main ICD10: S66 Injury of muscle and tendon at wrist and hand level -0.331 0.232 0.154 Wald ratio 1 cis NA
Thalamus volume -23.8 16.9 0.158 Wald ratio 1 cis NA
…and 50 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

No prot-* pQTL GWAS dataset found for this protein (matched by UniProt accession and symbol).

3. GWAS Catalog results — traits with signal at this locus

51 association rows across 31 traits (49 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Out at first protein homolog levels 9e-384 rs2845705 3 GCST90248768 no MR -> candidate analysis
Blood protein levels 2e-317 rs2845705 2 GCST006585 no MR -> candidate analysis
Interleukin-25 levels (IL25.4137.57.2) 6e-194 rs2508490 1 GCST90241625 no MR -> candidate analysis
Serum levels of protein OAF 6e-136 rs2508490 2 GCST90089411 no MR -> candidate analysis
Interleukin-25 levels 2e-122 rs2508490 7 GCST90161981 no MR -> candidate analysis
Cerebrospinal fluid protein OAF levels 2e-100 rs499434 1 GCST90944842 no MR -> candidate analysis
EFNB2 protein levels 2e-95 rs2845705 1 GCST90469082 no MR -> candidate analysis
Out at first protein homolog levels (OAF.6414.8.3) 2e-56 rs117554512 2 GCST90242179 no MR -> candidate analysis
Protein quantitative trait loci 9e-42 rs562966 1 GCST010900 no MR -> candidate analysis
OAF protein level (protein group normalized intensity) 3e-23 rs2845705 1 GCST90570788 no MR -> candidate analysis
CLEC14A/PIK3IP1 protein level ratio 2e-19 rs2444239 1 GCST90314080 no MR -> candidate analysis
Serum urate levels 9e-19 rs2444239 3 GCST90455669 no MR -> candidate analysis
…and 19 more traits (see JSON)          

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

Top diseases by Open Targets association (of 40 total). Associations are loci, not causal claims. The causal-status column is a four-state triage per pair: established (curated) = a curated clinical assertion exists (ClinGen/G2P/GEL/Orphanet/ClinVar — any validity level, MR adds little); exploratory rare-variant signal = ExWAS burden evidence without curation — a candidate NEW gene-disease relationship; common-variant locus = GWAS signal, classic pQTL-MR territory; multi-layer = burden+GWAS together, an allelic-series candidate (the strongest causal setup). Burden estimand is carrier-vs-noncarrier, not per-SD MR.

Disease genetic assoc. burden (ExWAS) causal status MR status
gout 0.685 common-variant locus MR: beta=-0.074, p=0.191 (cis)
hypertensive disorder 0.563 common-variant locus no MR -> candidate analysis
disorder of patella 0.052 common-variant locus no MR -> candidate analysis
placental abruption 0.046 common-variant locus no MR -> candidate analysis
obesity disorder 0.04 common-variant locus no MR -> candidate analysis
corneal ulcer 0.038 common-variant locus no MR -> candidate analysis
Abnormal pupillary function 0.036 common-variant locus no MR -> candidate analysis
injury 0.035 common-variant locus MR: beta=-0.331, p=0.154 (cis)
gram-negative bacterial infections 0.032 common-variant locus no MR -> candidate analysis
smoking initiation 0.032 common-variant locus no MR -> candidate analysis
seborrheic keratosis 0.031 common-variant locus no MR -> candidate analysis

Of the 11 rows above, 9 have no MR estimate in this resource. Across all retrieved diseases for this gene: 0 exploratory rare-variant signal(s), 0 multi-layer (allelic-series candidate) pair(s). Final triage still belongs to a statistical geneticist.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability not available — no ChEMBL target (undrugged)
gnomAD constraint pLI=0.0045, LOEUF=0.918 — LoF-tolerant
GWAS Catalog 60 unique SNPs / 120 rows
ClinVar 92 records; 1 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance