CausalSentinel

Protein Dossier — ORM1 (Alpha-1-acid glycoprotein 1)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Forced vital capacity (FVC) -0.0373 0.00954 9.21e-05 Wald ratio 1 cis NA
Forced expiratory volume in 1-second (FEV1) -0.0384 0.0101 1.36e-04 Wald ratio 1 cis NA
Diagnoses - main ICD10: S76 Injury of muscle and tendon at hip and thigh level 0.857 0.253 6.93e-04 Wald ratio 1 cis NA
Non-cancer illness code self-reported: polio or poliomyelitis 0.701 0.236 0.00293 Wald ratio 1 cis NA
Body mass index (BMI) 0.0268 0.0116 0.0211 Wald ratio 1 cis NA
Diagnoses - main ICD10: M72 Fibroblastic disorders 0.259 0.124 0.037 Wald ratio 1 cis NA
Non-cancer illness code self-reported: gastro-oesophageal reflux (gord) or gastric reflux 0.1 0.0508 0.0484 Wald ratio 1 cis NA
Diagnoses - main ICD10: G56 Mononeuropathies of upper limb -0.219 0.112 0.05 Wald ratio 1 cis NA
Coronary heart disease -0.115 0.0604 0.0571 Wald ratio 1 cis NA
Diagnoses - main ICD10: M23 Internal derangement of knee -0.174 0.094 0.0641 Wald ratio 1 cis NA
Myocardial infarction -0.122 0.066 0.0643 Wald ratio 1 cis NA
Non-cancer illness code self-reported: hypothyroidism or myxoedema 0.0876 0.0475 0.0649 Wald ratio 1 cis NA
…and 62 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

No prot-* pQTL GWAS dataset found for this protein (matched by UniProt accession and symbol).

3. GWAS Catalog results — traits with signal at this locus

107 association rows across 85 traits (101 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Circulating TGFBI levels 4e-319 rs10982156 2 GCST90860488 no MR -> candidate analysis
PDGFC protein levels 8e-288 rs113354603 2 GCST90470190 no MR -> candidate analysis
Circulating PDGFC levels 6e-277 rs113354603 3 GCST90860265 no MR -> candidate analysis
F10 protein levels 1e-220 rs10982156 1 GCST90469163 no MR -> candidate analysis
Glycoprotein acetyls levels 1e-206 rs10982156 4 GCST90501111 no MR -> candidate analysis
PROS1 protein levels 4e-189 rs10982156 1 GCST90470337 no MR -> candidate analysis
SPINK2 protein levels 8e-146 rs10982164 1 GCST90470722 no MR -> candidate analysis
Coagulation Factor X levels 2e-85 rs116994374 2 GCST90247101 no MR -> candidate analysis
Coagulation factor Xa levels 8e-72 rs10982156 3 GCST90247102 no MR -> candidate analysis
Circulating CLEC1A levels 4e-62 rs10982156 1 GCST90860255 no MR -> candidate analysis
CLEC1A protein levels 2e-61 rs10982156 2 GCST90468767 no MR -> candidate analysis
Circulating TNR levels 2e-60 rs10982156 1 GCST90859737 no MR -> candidate analysis
…and 73 more traits (see JSON)          

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

No genetically-associated diseases retrieved from Open Targets.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability 0 known modulators (ORM1-like protein 3)
gnomAD constraint pLI=0.04, LOEUF=0.768 — LoF-tolerant
GWAS Catalog 101 unique SNPs / 208 rows
ClinVar 78 records; 2 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance