CausalSentinel

Protein Dossier — OSMR (Oncostatin-M-specific receptor subunit beta)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Cancer code self-reported: prostate cancer 0.39 0.11 3.76e-04 Wald ratio 1 cis NA
Diagnoses - main ICD10: K20 Oesophagitis 0.299 0.104 0.00396 Wald ratio 1 cis NA
Diagnoses - main ICD10: C61 Malignant neoplasm of prostate 0.339 0.122 0.0053 Wald ratio 1 cis NA
Childhood intelligence 0.203 0.0761 0.00766 Wald ratio 1 cis NA
Eye problems or disorders: Cataract 0.166 0.0634 0.0089 Wald ratio 1 cis NA
Forearm bone mineral density -0.205 0.0876 0.0191 Wald ratio 1 cis NA
Non-cancer illness code self-reported: hyperthyroidism or thyrotoxicosis 0.271 0.123 0.0283 Wald ratio 1 cis NA
Non-cancer illness code self-reported: hayfever or allergic rhinitis 0.109 0.0506 0.0319 Wald ratio 1 cis NA
Diagnoses - main ICD10: R04 Haemorrhage from respiratory passages 0.301 0.144 0.0369 Wald ratio 1 cis NA
Transferrin Saturation -0.112 0.056 0.0464 Wald ratio 1 cis NA
Nucleus accumbens volume 12 6.18 0.0519 Wald ratio 1 cis NA
Hirschsprung’s disease 1.45 0.765 0.0583 Wald ratio 1 cis NA
…and 86 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

No prot-* pQTL GWAS dataset found for this protein (matched by UniProt accession and symbol).

3. GWAS Catalog results — traits with signal at this locus

137 association rows across 79 traits (104 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Circulating OSMR levels 6e-1800 rs9292723 6 GCST90860497 no MR -> candidate analysis
OSMR protein levels 5e-249 rs74924445 13 GCST90470132 no MR -> candidate analysis
Circulating LIFR levels 3e-54 rs4487517 3 GCST90859867 no MR -> candidate analysis
LIFR protein levels 3e-51 rs4487517 2 GCST90469769 no MR -> candidate analysis
Oncostatin-M-specific receptor subunit beta levels 2e-35 rs10941412 2 GCST90248796 no MR -> candidate analysis
Postoperative survival time in hepatocellular carcinoma 1e-32 rs34675408 2 GCST007650 no MR -> candidate analysis
ADP-ribosylation factor-like protein 5B levels 2e-23 rs146531093 1 GCST90246577 no MR -> candidate analysis
Inflammatory bowel disease 2e-20 rs395157 3 GCST003043 no MR -> candidate analysis
Red blood cell count 3e-19 rs357282 3 GCST90662905 no MR -> candidate analysis
Cerebrospinal fluid protein OSMR levels 4e-17 rs10472312 1 GCST90945027 no MR -> candidate analysis
EGFLAM protein levels 4e-17 rs537775424 1 GCST90469084 no MR -> candidate analysis
Crohn’s disease 2e-16 rs395157 3 GCST003044 no MR -> candidate analysis
…and 67 more traits (see JSON)          

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

Top diseases by Open Targets association (of 607 total). Associations are loci, not causal claims. The causal-status column is a four-state triage per pair: established (curated) = a curated clinical assertion exists (ClinGen/G2P/GEL/Orphanet/ClinVar — any validity level, MR adds little); exploratory rare-variant signal = ExWAS burden evidence without curation — a candidate NEW gene-disease relationship; common-variant locus = GWAS signal, classic pQTL-MR territory; multi-layer = burden+GWAS together, an allelic-series candidate (the strongest causal setup). Burden estimand is carrier-vs-noncarrier, not per-SD MR.

Disease genetic assoc. burden (ExWAS) causal status MR status
amyloidosis, primary localized cutaneous, 1 0.874 established (curated) no MR -> candidate analysis
familial primary localized cutaneous amyloidosis 0.608 established (curated) no MR -> candidate analysis
ulcerative colitis 0.623 common-variant locus no MR -> candidate analysis
inflammatory bowel disease 0.621 common-variant locus no MR -> candidate analysis
Crohn disease 0.621 common-variant locus no MR -> candidate analysis
venous thromboembolism 0.533 common-variant locus no MR -> candidate analysis
viral infectious disease 0.511 common-variant locus no MR -> candidate analysis
psoriasis 0.5 common-variant locus MR: beta=-0.258, p=0.135 (cis)
sclerosing cholangitis 0.5 common-variant locus MR: beta=-0.215, p=0.212 (cis)
ankylosing spondylitis 0.5 common-variant locus MR: beta=-0.476, p=0.413 (cis)
macular degeneration 0.487 common-variant locus no MR -> candidate analysis
neutropenia 0.44 common-variant locus no MR -> candidate analysis
skin cancer 0.355 common-variant locus no MR -> candidate analysis
respiratory system disorder 0.352 common-variant locus no MR -> candidate analysis
external ear disorder 0.352 common-variant locus no MR -> candidate analysis

Of the 15 rows above, 12 have no MR estimate in this resource. Across all retrieved diseases for this gene: 0 exploratory rare-variant signal(s), 0 multi-layer (allelic-series candidate) pair(s). Final triage still belongs to a statistical geneticist.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability 1 known modulators (Oncostatin-M-specific receptor subunit beta)
gnomAD constraint pLI=1.5e-22, LOEUF=0.975 — LoF-tolerant
GWAS Catalog 97 unique SNPs / 180 rows
ClinVar 247 records; 4 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance