CausalSentinel

Protein Dossier — PRRG1 (Transmembrane gamma-carboxyglutamic acid protein 1)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Systolic blood pressure automated reading 0.0521 0.0146 3.60e-04 Wald ratio 1 trans NA
Diagnoses - main ICD10: R07 Pain in throat and chest 0.184 0.0532 5.54e-04 Wald ratio 1 trans NA
Hearing difficulty or problems: Yes 0.0695 0.023 0.00254 Wald ratio 1 trans NA
Primary sclerosing cholangitis -0.453 0.154 0.00335 Wald ratio 1 trans NA
Hippocampus volume -66.9 24.8 0.00703 Wald ratio 1 trans NA
Hip osteoarthritis 0.44 0.171 0.00986 Wald ratio 1 trans NA
Eye problems or disorders: Glaucoma 0.24 0.0945 0.0111 Wald ratio 1 trans NA
Non-cancer illness code self-reported: high cholesterol 0.0869 0.0355 0.0144 Wald ratio 1 trans NA
Microalbuminuria 0.298 0.122 0.0145 Wald ratio 1 trans NA
Vascular or heart problems diagnosed by doctor: Angina 0.166 0.0683 0.0148 Wald ratio 1 trans NA
Diagnoses - main ICD10: B37 Candidiasis 0.812 0.347 0.0194 Wald ratio 1 trans NA
Non-cancer illness code self-reported: diverticular disease or diverticulitis 0.246 0.107 0.0215 Wald ratio 1 trans NA
…and 106 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

No prot-* pQTL GWAS dataset found for this protein (matched by UniProt accession and symbol).

3. GWAS Catalog results — traits with signal at this locus

1 association rows across 1 traits (0 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Cognitive performance (attention) (longitudinal) 1e-6 rs7891774 1 GCST90104685 no MR -> candidate analysis

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

No genetically-associated diseases retrieved from Open Targets.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability not available — no ChEMBL target (undrugged)
gnomAD constraint pLI=0.28, LOEUF=0.888 — LoF-tolerant
GWAS Catalog 2 unique SNPs / 4 rows
ClinVar 211 records; 4 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance