CausalSentinel

Protein Dossier — RAET1E (Retinoic acid early transcript 1E)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Non-cancer illness code self-reported: gout 0.119 0.0464 0.0104 Wald ratio 1 trans NA
Diagnoses - main ICD10: N20 Calculus of kidney and ureter -0.199 0.0913 0.0289 Wald ratio 1 trans NA
Non-cancer illness code self-reported: bladder problem (not cancer) 0.153 0.0704 0.0296 Wald ratio 1 trans NA
Underlying (primary) cause of death: ICD10: E85.4 Organ-limited amyloidosis 1.21 0.583 0.0387 Wald ratio 1 trans NA
Hirschsprung’s disease -0.776 0.378 0.04 Wald ratio 1 trans NA
Diagnoses - main ICD10: G47 Sleep disorders 0.145 0.0706 0.0404 Wald ratio 1 trans NA
Body fat -0.0282 0.0139 0.042 Wald ratio 1 trans NA
Neo-neuroticism 0.472 0.241 0.0504 Wald ratio 1 trans NA
Neo-agreeableness -0.302 0.156 0.0526 Wald ratio 1 trans NA
Non-cancer illness code self-reported: hypertension 0.0189 0.0104 0.0692 Wald ratio 1 trans NA
Lung cancer 0.0869 0.048 0.0701 Wald ratio 1 trans NA
Non-cancer illness code self-reported: pernicious anaemia -0.283 0.157 0.0707 Wald ratio 1 trans NA
…and 105 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

No prot-* pQTL GWAS dataset found for this protein (matched by UniProt accession and symbol).

3. GWAS Catalog results — traits with signal at this locus

15 association rows across 12 traits (12 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Low-density lipoprotein receptor-related protein 11 levels 2e-1411 rs9322225 1 GCST90248262 no MR -> candidate analysis
Blood protein levels 4e-286 rs9371533 1 GCST006585 no MR -> candidate analysis
LRP11 protein levels 1e-79 rs555648964 4 GCST90469796 no MR -> candidate analysis
Circulating LRP11 levels 1e-24 rs6557163 1 GCST90860386 no MR -> candidate analysis
Low-density lipoprotein receptor-related protein 11 (analyte 4e-23 rs1889471 1 GCST90422684 no MR -> candidate analysis
ULBP2 protein levels 5e-15 rs181773431 1 GCST90471008 no MR -> candidate analysis
Low-density lipoprotein receptor-related protein 11 (analyte 3e-14 rs1889471 1 GCST90427338 no MR -> candidate analysis
Cerebrospinal fluid protein LRP11 levels 2e-8 rs1889471 1 GCST90944405 no MR -> candidate analysis
Height 4e-8 rs9969044 1 GCST90245848 no MR -> candidate analysis
Aging (eyeAgeAcceleration) 8e-8 rs531479946 1 GCST90274864 no MR -> candidate analysis
Autism spectrum disorder 2e-7 rs9383583 1 GCST012816 no MR -> candidate analysis
Lupus nephritis in systemic lupus erythematosus 5e-6 rs17079029 1 GCST90728615 no MR -> candidate analysis

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

No genetically-associated diseases retrieved from Open Targets.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability not available — no ChEMBL target (undrugged)
gnomAD constraint pLI=1.1e-11, LOEUF=1.76 — LoF-tolerant
GWAS Catalog 85 unique SNPs / 170 rows
ClinVar 64 records; 4 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance