CausalSentinel

Protein Dossier — RECQL (ATP-dependent DNA helicase Q1)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Weight -0.0199 0.00551 2.94e-04 Wald ratio 1 cis NA
Body mass index (BMI) -0.0198 0.00624 0.00146 Wald ratio 1 cis NA
Non-cancer illness code self-reported: uterine fibroids -0.155 0.0591 0.00868 Wald ratio 1 cis NA
Small vessel disease 0.23 0.0916 0.0118 Wald ratio 1 cis NA
Diagnoses - main ICD10: C50 Malignant neoplasm of breast -0.129 0.0557 0.0202 Wald ratio 1 cis NA
Non-cancer illness code self-reported: hypothyroidism or myxoedema 0.0601 0.0261 0.0213 Wald ratio 1 cis NA
Total cholesterol -0.031 0.0135 0.0214 Wald ratio 1 cis NA
Depressive symptoms -0.0193 0.00856 0.0244 Wald ratio 1 cis NA
Diagnoses - main ICD10: I30 Acute pericarditis 0.508 0.228 0.0255 Wald ratio 1 cis NA
Eye problems or disorders: Cataract 0.0672 0.032 0.0354 Wald ratio 1 cis NA
Cough on most days 0.0608 0.03 0.0426 Wald ratio 1 cis NA
Amygdala volume 12.2 6.13 0.047 Wald ratio 1 cis NA
…and 94 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

No prot-* pQTL GWAS dataset found for this protein (matched by UniProt accession and symbol).

3. GWAS Catalog results — traits with signal at this locus

2 association rows across 2 traits (2 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Direct bilirubin levels 2e-13 rs73071387 1 GCST90019505 no MR -> candidate analysis
Total bilirubin levels 3e-12 rs73071387 1 GCST90019521 no MR -> candidate analysis

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

Top diseases by Open Targets association (of 170 total). Associations are loci, not causal claims. The causal-status column is a four-state triage per pair: established (curated) = a curated clinical assertion exists (ClinGen/G2P/GEL/Orphanet/ClinVar — any validity level, MR adds little); exploratory rare-variant signal = ExWAS burden evidence without curation — a candidate NEW gene-disease relationship; common-variant locus = GWAS signal, classic pQTL-MR territory; multi-layer = burden+GWAS together, an allelic-series candidate (the strongest causal setup). Burden estimand is carrier-vs-noncarrier, not per-SD MR.

Disease genetic assoc. burden (ExWAS) causal status MR status
RECON progeroid syndrome 0.664 established (curated) no MR -> candidate analysis
Inherited cancer-predisposing syndrome 0.83 established (curated) no MR -> candidate analysis
hereditary neoplastic syndrome 0.83 established (curated) no MR -> candidate analysis
obesity disorder 0.662 common-variant locus no MR -> candidate analysis
Hereditary breast and ovarian cancer syndrome 0.538 established (curated) no MR -> candidate analysis
hereditary breast ovarian cancer syndrome 0.538 established (curated) no MR -> candidate analysis
cancer 0.438 established (curated) MR: beta=-0.155, p=0.00868 (cis)
overnutrition 0.449 common-variant locus no MR -> candidate analysis
non-neoplastic bile duct disorder 0.411 common-variant locus no MR -> candidate analysis
familial ovarian cancer 0.245 established (curated) no MR -> candidate analysis
Abnormal facial shape 0.195 established (curated) no MR -> candidate analysis
Short stature 0.195 established (curated) no MR -> candidate analysis
hepatoblastoma 0.182 established (curated) no MR -> candidate analysis
myopathy 0.095 common-variant locus no MR -> candidate analysis
alcohol drinking 0.048 common-variant locus no MR -> candidate analysis

Of the 15 rows above, 14 have no MR estimate in this resource. Across all retrieved diseases for this gene: 0 exploratory rare-variant signal(s), 0 multi-layer (allelic-series candidate) pair(s). Final triage still belongs to a statistical geneticist.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability 0 known modulators (ATP-dependent DNA helicase Q1)
gnomAD constraint pLI=2.5e-24, LOEUF=1.17 — LoF-tolerant
GWAS Catalog 52 unique SNPs / 104 rows
ClinVar 1930 records; 0 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance