CausalSentinel

Protein Dossier — SMIM9 (Small integral membrane protein 9)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Vascular or heart problems diagnosed by doctor: Angina 0.133 0.0391 6.54e-04 Wald ratio 1 trans NA
Depressive symptoms 0.0394 0.0121 0.00115 Wald ratio 1 trans NA
Schizophrenia 0.103 0.0352 0.00328 Wald ratio 1 trans NA
Forced vital capacity (FVC) -0.0187 0.00653 0.00414 Wald ratio 1 trans NA
Forced expiratory volume in 1-second (FEV1) -0.019 0.00689 0.00577 Wald ratio 1 trans NA
Happiness 0.026 0.00986 0.00834 Wald ratio 1 trans NA
Microalbuminuria 0.164 0.0698 0.0189 Wald ratio 1 trans NA
Alcohol intake frequency 0.0272 0.0118 0.0207 Wald ratio 1 trans NA
Non-cancer illness code self-reported: osteoarthritis 0.0566 0.0252 0.0247 Wald ratio 1 trans NA
Diagnoses - main ICD10: N81 Female genital prolapse 0.13 0.0586 0.0263 Wald ratio 1 trans NA
Diastolic blood pressure automated reading 0.0177 0.00815 0.0298 Wald ratio 1 trans NA
Heel bone mineral density (BMD) T-score automated 0.0217 0.0103 0.0355 Wald ratio 1 trans NA
…and 102 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

No prot-* pQTL GWAS dataset found for this protein (matched by UniProt accession and symbol).

3. GWAS Catalog results — traits with signal at this locus

1 association rows across 1 traits (1 genome-wide significant rows). Associations are loci, not causal claims; the mapped gene at a locus is not necessarily the effector gene.

Trait best p lead SNP n assoc study MR status
Hemoglobin 4e-8 rs201920434 1 GCST90278631 no MR -> candidate analysis

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

No genetically-associated diseases retrieved from Open Targets.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability not available — no ChEMBL target (undrugged)
gnomAD constraint pLI=0.00069, LOEUF=1.99 — LoF-tolerant
GWAS Catalog 8 unique SNPs / 16 rows
ClinVar 235 records; 18 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance