CausalSentinel

Protein Dossier — TIMP1 (Metalloproteinase inhibitor 1)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Diagnoses - main ICD10: D12 Benign neoplasm of colon rectum anus and anal canal 0.316 0.116 0.00656 Wald ratio 1 trans NA
Age at menopause 0.367 0.138 0.00766 Wald ratio 1 trans NA
HbA1C -0.0679 0.0257 0.00822 Wald ratio 1 trans NA
Cigarettes smoked per day -1.58 0.613 0.00981 Wald ratio 1 trans NA
Diagnoses - main ICD10: K29 Gastritis and duodenitis 0.239 0.0957 0.0126 Wald ratio 1 trans NA
Non-cancer illness code self-reported: vaginal prolapse or uterine prolapse 0.425 0.171 0.0128 Wald ratio 1 trans NA
Iron 0.178 0.0752 0.0177 Wald ratio 1 trans NA
Knee osteoarthritis -0.483 0.209 0.0205 Wald ratio 1 trans NA
Nucleus accumbens volume 18.6 8.46 0.0282 Wald ratio 1 trans NA
Potassium in urine -0.039 0.0188 0.0386 Wald ratio 1 trans NA
Diagnoses - main ICD10: R11 Nausea and vomiting 0.418 0.205 0.0409 Wald ratio 1 trans NA
Eye problems or disorders: Injury or trauma resulting in loss of vision 0.354 0.177 0.0459 Wald ratio 1 trans NA
…and 85 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

Dataset Trait Author Year
prot-c-2211_9_6 TIMP-1 Suhre K 2019

3. GWAS Catalog results — traits with signal at this locus

No GWAS Catalog associations mapped to this gene.

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

No genetically-associated diseases retrieved from Open Targets.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability not available — no ChEMBL target (undrugged)
gnomAD constraint pLI=0.51, LOEUF=0.765 — LoF-tolerant
GWAS Catalog 2 unique SNPs / 4 rows
ClinVar 208 records; 2 pathogenic in sample of 30
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance