CausalSentinel

Protein Dossier — WISP2 (CCN family member 5)

MR feasibility tier: A — Published pQTL-MR estimates exist for this protein (retrieved below - not computed here).

1. Published MR estimates (retrieved, not computed)

Outcome beta se p method nSNP cis/trans coloc
Cancer code self-reported: small intestine or small bowel cancer 0.898 0.247 2.80e-04 Wald ratio 1 cis NA
Diagnoses - main ICD10: L03 Cellulitis 0.265 0.103 0.0102 Wald ratio 1 cis NA
Diagnoses - main ICD10: N92 Excessive frequent and irregular menstruation 0.163 0.0711 0.022 Wald ratio 1 cis NA
Mean platelet volume -0.0127 0.00563 0.0244 Wald ratio 1 cis NA
Neo-agreeableness -0.689 0.307 0.0247 Wald ratio 1 cis NA
Intracranial volume 2.11e+04 9.41e+03 0.0252 Wald ratio 1 cis NA
Age at menarche -0.061 0.0286 0.033 Wald ratio 1 cis NA
Ischemic stroke 0.169 0.0803 0.0358 Wald ratio 1 cis NA
Bipolar disorder -0.244 0.122 0.0445 Wald ratio 1 cis NA
Diagnoses - main ICD10: Z09 Follow-up examination after treatment for conditions other than malignant neoplasms 0.165 0.0831 0.0472 Wald ratio 1 cis NA
Red blood cell count -0.0239 0.0122 0.0498 Wald ratio 1 cis NA
Packed cell volume -0.178 0.0925 0.0544 Wald ratio 1 cis NA
…and 92 more outcomes (see JSON)              

2. pQTL instrument availability (Tier-B probe)

No prot-* pQTL GWAS dataset found for this protein (matched by UniProt accession and symbol).

3. GWAS Catalog results — traits with signal at this locus

No GWAS Catalog associations mapped to this gene.

4. Phenome map — where this gene is a genetic locus, vs. where MR exists

Top diseases by Open Targets association (of 307 total). Associations are loci, not causal claims. The causal-status column is a four-state triage per pair: established (curated) = a curated clinical assertion exists (ClinGen/G2P/GEL/Orphanet/ClinVar — any validity level, MR adds little); exploratory rare-variant signal = ExWAS burden evidence without curation — a candidate NEW gene-disease relationship; common-variant locus = GWAS signal, classic pQTL-MR territory; multi-layer = burden+GWAS together, an allelic-series candidate (the strongest causal setup). Burden estimand is carrier-vs-noncarrier, not per-SD MR.

Disease genetic assoc. burden (ExWAS) causal status MR status
type 2 diabetes mellitus 0.534 common-variant locus no MR -> candidate analysis

Of the 1 rows above, 1 have no MR estimate in this resource. Across all retrieved diseases for this gene: 0 exploratory rare-variant signal(s), 0 multi-layer (allelic-series candidate) pair(s). Final triage still belongs to a statistical geneticist.

5. Downstream annotation (druggability & safety preview)

Layer Result
ChEMBL druggability not available — no ChEMBL target (undrugged)
gnomAD constraint not available
GWAS Catalog no mapped SNPs
ClinVar no records
PharmGKB/ClinPGx no annotations

Caveats declared by the tools

Sources

Provenance